View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6106_low_10 (Length: 251)
Name: NF6106_low_10
Description: NF6106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6106_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 44153785 - 44154025
Alignment:
| Q |
1 |
aataattattaatcagacaagcacgcacacaattgaattgaacaaactataatgaagaaacgttattattagtaaattaagcaaatgaaatcaatcagaa |
100 |
Q |
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| T |
44153785 |
aataattattaatcagacaagcacgcacacaattgaattgaacaaactataattaagaaacgttattattagtaaattaagcaaatgaaatcaatcagga |
44153884 |
T |
|
| Q |
101 |
agaacaataataacgaccgaaaatctctctttgagtttccatttcaaataaaattcaaattaaagacatgcacacggttgaattgaactaatcatgatga |
200 |
Q |
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| T |
44153885 |
agaacaataataacgaccgaaaatctctctttgagtttccatttcaaataaaattcaaattaaagacatgcacacagttgaattgaactaatcatgatga |
44153984 |
T |
|
| Q |
201 |
aacattgtcaaataaaatcagaaagaacactgatacctttg |
241 |
Q |
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| T |
44153985 |
aacattgtcaaataaaatcagaaagaacaataatacctttg |
44154025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 40898504 - 40898750
Alignment:
| Q |
1 |
aataattattaatcagacaagcacgcacacaattgaattgaacaaactataatgaagaaacgttattattagtaaatta--------agcaaatgaaatc |
92 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40898504 |
aataattattaatcagacaagcacgcacacaattgaattgaacaaactataatgaagaaacgttattattagtaaattagtaaattaagcaaatgaaatc |
40898603 |
T |
|
| Q |
93 |
aatcagaaagaacaataataacgaccgaaaatctctctttgagtttccatttcaaataaaattcaaattaaagacatgcacacggttgaattgaactaat |
192 |
Q |
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| T |
40898604 |
aatcagaaagaacaataataacaaccgaaaatctctct--gagtttccatttcaaataaaattcaaattaaagacatgcacacggttgaattgaactaat |
40898701 |
T |
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| Q |
193 |
catgatgaaacattgtcaaataaaatcagaaagaacactgatacctttg |
241 |
Q |
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| T |
40898702 |
catgatgaaacattgtcaaataaaatcagaaagaacaataatacctttg |
40898750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 40894711 - 40894651
Alignment:
| Q |
153 |
attcaaattaaagacatgcacacggttgaattgaactaatcatgatgaaacattgtcaaat |
213 |
Q |
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||||||||| | ||| |||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
40894711 |
attcaaattctaaacaagcacacaattgaattgaactaatcatgatgaaacattgttaaat |
40894651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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