View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6106_low_11 (Length: 241)
Name: NF6106_low_11
Description: NF6106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6106_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 44153440 - 44153575
Alignment:
| Q |
21 |
aatcatcaaactaatcatcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaatgtcctcaga |
120 |
Q |
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| T |
44153440 |
aatcatcaaactaatcgtcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaatgtcctcaga |
44153539 |
T |
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| Q |
121 |
ttctttgccttttcctcctgcatgaatcaataatca |
156 |
Q |
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| T |
44153540 |
ttctttgccttttcctcctgcatgaatcaataatca |
44153575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 156
Target Start/End: Complemental strand, 40894854 - 40894720
Alignment:
| Q |
22 |
atcatcaaactaatcatcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaatgtcctcagat |
121 |
Q |
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| T |
40894854 |
atcatcaaactaatcatcttcagaatcatcatttgcatctgttgatttccacttctgctcatcagagctaagctcctccaaggttgaaatgtcctcagat |
40894755 |
T |
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| Q |
122 |
tctttgccttttcctcctgcatgaatcaataatca |
156 |
Q |
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| T |
40894754 |
tctttgtcttttcctcctacaagaatcaataatca |
40894720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 153
Target Start/End: Original strand, 40898187 - 40898301
Alignment:
| Q |
42 |
cagaatcatcattcgcatctgctgatttccacttcggcacatcaga---gctcagctcctccaaggttgaaatgtcctcagattctttgccttttcctcc |
138 |
Q |
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| T |
40898187 |
cagaatcatcatttgcatctgctgatttccacttctgcacatcagaagagctcagctcctccaaggttgaaatgtcctcagattctttgccttttcctcc |
40898286 |
T |
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| Q |
139 |
tgcatgaatcaataa |
153 |
Q |
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| T |
40898287 |
tgcatgaatcaataa |
40898301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 44153611 - 44153663
Alignment:
| Q |
159 |
gaatttaactaatcataatgaaacaatcttaaatctgaaacaaatgaaatcag |
211 |
Q |
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| T |
44153611 |
gaatttaactaatcataatgaaacaatcttaaatctgaaacaaatgaaatcag |
44153663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 40898330 - 40898382
Alignment:
| Q |
159 |
gaatttaactaatcataatgaaacaatcttaaatctgaaacaaatgaaatcag |
211 |
Q |
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| T |
40898330 |
gaattgaactaatcaaaatgaaacaatcttaaatccgaaacaaatgaaatcag |
40898382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 40894684 - 40894632
Alignment:
| Q |
159 |
gaatttaactaatcataatgaaacaatcttaaatctgaaacaaatgaaatcag |
211 |
Q |
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||||| |||||||||| |||||||| | ||||||||||||||||| ||||||| |
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| T |
40894684 |
gaattgaactaatcatgatgaaacattgttaaatctgaaacaaataaaatcag |
40894632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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