View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6106_low_12 (Length: 240)
Name: NF6106_low_12
Description: NF6106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6106_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 38867961 - 38868181
Alignment:
| Q |
2 |
ggtccgtgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaatcagcaaacaattggctgtgttggaaggatataaaccattgca |
101 |
Q |
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| T |
38867961 |
ggtccatgttccatcaccttaatgctcccacatgggttacaagttggtgttaatcaatcagctaacaattggctgtgttggaaggacataaaccattgca |
38868060 |
T |
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| Q |
102 |
tattctatgttttaaaagatgtgggacattttattgctcccaagacaattaatgatcttatgttggaaatatgcatgtcacacatcatatgcaaatttac |
201 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
38868061 |
tattctatgttttaaacgatgtgagacattttattgctcccaagacaattaatggtcttatgttggaaatatgcatgtcacatatcatatgcatatttac |
38868160 |
T |
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| Q |
202 |
ccactctgatcataactcatg |
222 |
Q |
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| T |
38868161 |
ccactctgatcataagtcatg |
38868181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 38807414 - 38807226
Alignment:
| Q |
8 |
tgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctgtgttggaaggatataaaccattgcatattc |
106 |
Q |
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| T |
38807414 |
tgttccatccctttgttgctcccacatgggtcacaagttggtgttaatcaactcagcaaacaattggctgtgttggaagcctataaaccattgcattaat |
38807315 |
T |
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| Q |
107 |
tatgttttaaaagatgtgggacattttattgctcccaagacaattaatgatcttatgttggaaatatgcatgtcacacatcatatgcaa |
195 |
Q |
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| T |
38807314 |
tatgttttaaacgatgtgggacattttattgctcccaagacagttagtggtcttatgttggaaatatgcatgtcacacatcatatgcaa |
38807226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 38866004 - 38866193
Alignment:
| Q |
8 |
tgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctgtgttggaaggatataaaccattgcatattc |
106 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||| |
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| T |
38866004 |
tgttccatcaccttggtgctcccacatgggtcacaagttggtgttaatcaactcagcgaacaattggctgtgttggaagtttataaacaattgcatattt |
38866103 |
T |
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| Q |
107 |
tatgttttaaaagatgtgggacattttattgct-cccaagacaattaatgatcttatgttggaaatatgcatgtcacacatcatatgcaa |
195 |
Q |
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| T |
38866104 |
tatgttctaaccgatgtgggacattttattgctccccaagacacttggtggtcttatgttggaaatatgcatgtcacaggtcatatgcaa |
38866193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 38750086 - 38749953
Alignment:
| Q |
8 |
tgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctgtgttggaaggatataaaccattgcatattc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||| ||||||| |
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| T |
38750086 |
tgttccatcaccttgatgctcccacatgggttacaagttggtgttattcaactcagcaaacaaatggctgtgttggaaggttataaaccatttcatattc |
38749987 |
T |
|
| Q |
107 |
tatgttttaaaagatgtgggacattttattgctc |
140 |
Q |
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|||||| |||| |||||||||||||||||||||| |
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| T |
38749986 |
tatgttctaaacgatgtgggacattttattgctc |
38749953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 39310748 - 39310881
Alignment:
| Q |
8 |
tgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctgtgttggaaggatataaaccattgcatattc |
106 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39310748 |
tgttccatcaccttgttgctcccacatgggttacaagttggtgtaaatcaactcagcgaacaattggctgtgttggaagtttataaaccattgcatattc |
39310847 |
T |
|
| Q |
107 |
tatgttttaaaagatgtgggacattttattgctc |
140 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
39310848 |
tatgttttaaacgatgtgggacattttattgctc |
39310881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 38849016 - 38849149
Alignment:
| Q |
8 |
tgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaa-tcagcaaacaattggctgtgttggaaggatataaaccattgcatattc |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||||| || ||||| | |
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| T |
38849016 |
tgttccatcaccttgatgctcccacatgggttacaagttggtgttaatcaactcagcaaacaaatccctgtgttggaagcttataaaccgtttcatatgc |
38849115 |
T |
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| Q |
107 |
tatgttttaaaagatgtgggacattttattgctc |
140 |
Q |
| |
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| |||| |||| |||||||||||||||||||||| |
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| T |
38849116 |
tttgttctaaacgatgtgggacattttattgctc |
38849149 |
T |
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