View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6106_low_13 (Length: 218)
Name: NF6106_low_13
Description: NF6106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6106_low_13 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 5388594 - 5388377
Alignment:
| Q |
1 |
tcaagaagtacgtccctaccacctctgctaccaactacattcaacataatacaaatcaaaccaatttattttaacattgattccatatttaaattcacaa |
100 |
Q |
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| T |
5388594 |
tcaagaagtacgtccctaccacctctgctaccaactacattcaacataatacaaatcaaaccaatttattttaacattgattccatatttaaattcacaa |
5388495 |
T |
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| Q |
101 |
caattaatttaatctctaaagtattttttctctctaattaaatctttaaagcatataaaagtaataaacatttttaaagtatatgaaattcatcacttta |
200 |
Q |
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| T |
5388494 |
taattaatttaatctctaaagtattttttctctctaattaaatctttaaagcatataaaagtaataaacatttttaaagtatatgaaattcgtcacttta |
5388395 |
T |
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| Q |
201 |
atatttgttattaaaata |
218 |
Q |
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| T |
5388394 |
atctttgttattaaaata |
5388377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 5402326 - 5402216
Alignment:
| Q |
104 |
ttaatttaatctctaaagtattttttctctctaattaaatctttaaagcatataaaagtaataaacatttttaaagtatatgaaattcatcactttaata |
203 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5402326 |
ttaatttaatctctaaagtattttt-ctctctaattcaatctctaaagcatataaaagtaataaacatttttaaagtatatgaaattcgtcactttaatc |
5402228 |
T |
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| Q |
204 |
tttgttattaaa |
215 |
Q |
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|||||||||||| |
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| T |
5402227 |
tttgttattaaa |
5402216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5402403 - 5402346
Alignment:
| Q |
1 |
tcaagaagtacgtccctaccacctctgctaccaactacattcaacataatacaaatca |
58 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5402403 |
tcaagaagtacgtccctaccacctctgctaccaactacatccaacataatacaaatca |
5402346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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