View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6106_low_3 (Length: 375)
Name: NF6106_low_3
Description: NF6106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6106_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 15 - 357
Target Start/End: Original strand, 15788967 - 15789309
Alignment:
| Q |
15 |
caaaggtagtagatattggattgtcaaagcttcgaagtagagaaagtcacattgcaatgaatactcgctttaaaggaaaagcagcttatgcagcacctga |
114 |
Q |
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| T |
15788967 |
caaaggtagttaatattggattgtcaaagcttcgaagtagagaaagtcacattgcaatgaataatcgttttaaaggaaaagcagcttatgcagcacctga |
15789066 |
T |
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| Q |
115 |
aatgtggaaggcttgtccagaaacatataaatgtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaacgcgttttattgatcct |
214 |
Q |
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| T |
15789067 |
aatgtggaaggcttatccagaaacatataaatgcgatgtttatagttttggtattgttctatttgaaattgtaggtagaagaacgcattttattgatcct |
15789166 |
T |
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| Q |
215 |
acatatagtgaattacaaatttggttttcaaaaaggacatgggaaatgtttgagaatagtgaattggttgctatgcttgaattttgtggaattgaagaga |
314 |
Q |
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| T |
15789167 |
acatatagtgaatcacaaatttggttttcaaaaaggacatgggaaatgtttgagaatagtgaattggttgctatgcttgaattttgtggaattgaagaga |
15789266 |
T |
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| Q |
315 |
aagatactgagaaagctgagagaatgttaaaggttgctcaatg |
357 |
Q |
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| T |
15789267 |
aagatactgagaaagctgagagaatgttaaaggttgctcaatg |
15789309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 30 - 353
Target Start/End: Original strand, 15793183 - 15793503
Alignment:
| Q |
30 |
ttggattgtcaaagcttcgaagtagagaaagtcacattgcaatgaatactcgctttaaaggaaaagcagcttatgcagcacctgaaatgtggaaggcttg |
129 |
Q |
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| T |
15793183 |
ttggattagcaaagcttagaagtagagaaagtaacattgaactgaatactcactttagaggaacgagaggatatgccgcaccagaaatgtggaagcctta |
15793282 |
T |
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| Q |
130 |
tccagaaacatataaatgtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaacgcgttttattgatcctacatatagtgaatta |
229 |
Q |
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| T |
15793283 |
tccagtgacatataagtgtgatgtttatagttttggtattcttttatttgaaattgtagggagaagacggcatttt---gattctagctatagtgaatca |
15793379 |
T |
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| Q |
230 |
caaatttggttttcaaaaaggacatgggaaatgtttgagaatagtgaattggttgctatgcttgaattttgtggaattgaagagaaagatactgagaaag |
329 |
Q |
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| T |
15793380 |
caacaatggtttccaagatggacatgggaaatgtttgagaataatgaattggttgttatgcttgcactttgtgaaattgaagagaaagatagtgagatag |
15793479 |
T |
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| Q |
330 |
ctgagagaatgttaaaggttgctc |
353 |
Q |
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| T |
15793480 |
cagagagaatgttaaaggttgctc |
15793503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 48 - 353
Target Start/End: Complemental strand, 15778919 - 15778617
Alignment:
| Q |
48 |
gaagtagagaaagtcacattgcaatgaatactcgctttaaaggaaaagcagcttatgcagcacctgaaatgtggaaggcttgtccagaaacatataaatg |
147 |
Q |
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| T |
15778919 |
gaagtagagaaagtaacattgtaatgaatactcactttagaggaacgcgaggttatgctgcacctgaaatgtggaagccttatccagttacacacaagtg |
15778820 |
T |
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| Q |
148 |
tgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaacgcgttttattgatcctacatatagtgaattacaaatttggttttcaaaa |
247 |
Q |
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| T |
15778819 |
tgatgtttatagttttggtattcttctatttgaaattgttggcagaagaaggcatt---tcgattctagttacagtgaatcgcaacaatggtttccaaag |
15778723 |
T |
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| Q |
248 |
aggacatgggaaatgtttgagaatagtgaattggttgctatgcttgaattttgtggaattgaagagaaagatactgagaaagctgagagaatgttaaagg |
347 |
Q |
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| T |
15778722 |
tggacatgggaaatgtttgagaataatgaattggttgttatgcttgcgctttgtggagttgaagagaaagataatgagatagcagagagaatgttgaagg |
15778623 |
T |
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| Q |
348 |
ttgctc |
353 |
Q |
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| T |
15778622 |
ttgctc |
15778617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 15773079 - 15773135
Alignment:
| Q |
141 |
ataaatgtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaa |
197 |
Q |
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| T |
15773079 |
ataaatgtgatgtttatagttttggtatgctattatttgaaattataggtaggagaa |
15773135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 15794889 - 15794833
Alignment:
| Q |
141 |
ataaatgtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaa |
197 |
Q |
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| T |
15794889 |
ataaatgtgatgtttatagttttggtatgctgttatttgaaattgttggtaggagaa |
15794833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 15768453 - 15768504
Alignment:
| Q |
146 |
tgtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaa |
197 |
Q |
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| T |
15768453 |
tgtgacgtttatagttttggtatactactatttgaaattataggtaggagaa |
15768504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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