View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6106_low_4 (Length: 335)
Name: NF6106_low_4
Description: NF6106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6106_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 326
Target Start/End: Original strand, 38867581 - 38867910
Alignment:
| Q |
4 |
tcgaagaatatcaaggcaatgatatggtgaatgtctgtgtgaactgtgaagggtctatt-cagaagaatgaaactaaatagtaaatagtagttgaataaa |
102 |
Q |
| |
|
||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38867581 |
tcgaacaaaatcaaggcaatgatatggtgagtgtctgtgtgaactgtgaagggtctatttcagaagaatgaaactaaatagtaaatagtagttgaataaa |
38867680 |
T |
|
| Q |
103 |
atacatacagtttgagaagttcatgcttcaaaagaatgaaacagcnnnnnnnnnn--------catcaaataacactcattcaacccctttcaatctaga |
194 |
Q |
| |
|
||||||||| | | |||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38867681 |
atacatacaatatcagaagttcctgcttcaaaaaaatgaaacagccaaaaaaaaaaaaaaaaacatcaaataacactcattcaacccctttcaatctaga |
38867780 |
T |
|
| Q |
195 |
aatatggagtattattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaaccaacctcatgcagatcc |
294 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38867781 |
aatatggagtatcattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaaccaacctcatgcggatcc |
38867880 |
T |
|
| Q |
295 |
ctccccgttcagcgaccaggataaccatggcc |
326 |
Q |
| |
|
|| |||||||| ||||||||||||||||||| |
|
|
| T |
38867881 |
ct--ccgttcagtgaccaggataaccatggcc |
38867910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 38598698 - 38598804
Alignment:
| Q |
164 |
ataacactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattg |
263 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
38598698 |
ataacactcattcaacccctttcaatctaacaatatggagtattatttcacttttcagttctttaatgacaattggcaaaagaaaagtatagcactattg |
38598797 |
T |
|
| Q |
264 |
agccact |
270 |
Q |
| |
|
|| |||| |
|
|
| T |
38598798 |
agtcact |
38598804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 39953790 - 39953726
Alignment:
| Q |
167 |
acactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaatt |
231 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
39953790 |
acactcattcaacccctttcaatctagcaatatggagtattatttcacttttcagttctttaatt |
39953726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University