View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6106_low_7 (Length: 302)

Name: NF6106_low_7
Description: NF6106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6106_low_7
NF6106_low_7
[»] chr3 (7 HSPs)
chr3 (4-287)||(2441698-2441981)
chr3 (42-245)||(13479305-13479508)
chr3 (125-245)||(12132889-12133009)
chr3 (40-246)||(7432177-7432383)
chr3 (189-230)||(2678541-2678582)
chr3 (181-230)||(3754460-3754509)
chr3 (181-230)||(4142279-4142328)
[»] chr7 (2 HSPs)
chr7 (39-246)||(1078304-1078511)
chr7 (191-246)||(24723212-24723267)
[»] chr5 (2 HSPs)
chr5 (187-241)||(1427824-1427878)
chr5 (177-230)||(2067212-2067265)
[»] chr4 (1 HSPs)
chr4 (179-245)||(20019896-20019962)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 4 - 287
Target Start/End: Original strand, 2441698 - 2441981
Alignment:
Q  4 tacaagatagtagtggtaacattgcatgcaagacagaagtgaaggttcatacatctagtaccaattgttggaaaaacattcaggagtttacttttggtag 103  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2441698 tacaagatagtagtggtaatattgcatgcaagacagaagtgaaggttcatacatctattaccaattgttggaaaaacattcaggagtttacttttggtag 2441797  T
Q  104 tatccttcctgagcaatcaggtaaatttgtgagtgacacaattaattggttggccgttattgattttgatgggagaagtccacgctttattatttctttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2441798 tatccttcctgagcaatcaggtaaatttgtgagtgacacaattaattggttggccgttattgattttgatgggagaagtccacgctttattatttctttt 2441897  T
Q  204 gatttggagaaagagtcttatcaaaaggtattgcttcctgattctnnnnnnntaaatgtgtgtaacttcttggccttgtttgtg 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  2441898 gatttggagaaagagtcttatcaaaaggtattgcttcctgattctgggggggtaaatgtgtgtaacttcttggccttgtttgtg 2441981  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 245
Target Start/End: Original strand, 13479305 - 13479508
Alignment:
Q  42 gtgaaggttcatacatctagtaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtgaca 141  Q
    ||||||||||||||||   ||||| ||| |||||||| ||||||||||||| | ||||||  ||| | |  |||| |||| || ||||||||||||| ||    
T  13479305 gtgaaggttcatacattgggtacccatttttggaaaaccattcaggagtttccctttggtgttatgcctgttgagaaatctggaaaatttgtgagtggca 13479404  T
Q  142 caattaattggttggccgttattgattt-tgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttc 240  Q
      |||||||||||||||  || ||||||  ||  | | |||||||||||| ||| ||||||||||||||  |||||| |||||| |||| || |||| ||    
T  13479405 ggattaattggttggcctctactgatttaagactgca-aagtccacgcttcattgtttcttttgatttgcggaaagaatcttatgaaaaagttttgcctc 13479503  T
Q  241 ctgat 245  Q
    |||||    
T  13479504 ctgat 13479508  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 245
Target Start/End: Original strand, 12132889 - 12133009
Alignment:
Q  125 taaatttgtgagtgacacaattaattggttggccgttattgattttgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttat 224  Q
    |||||||||||||| ||| |||||||||||  ||  ||||||| |||||   | |||||| || |||||| |||||||||||||||  |||||||||| |    
T  12132889 taaatttgtgagtggcacgattaattggttaacctctattgatcttgatccaaaaagtcctcgttttattgtttcttttgatttgggaaaagagtctttt 12132988  T
Q  225 caaaaggtattgcttcctgat 245  Q
    | |||||| |||| |||||||    
T  12132989 cgaaaggttttgcctcctgat 12133009  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 7432383 - 7432177
Alignment:
Q  40 aagtgaaggttcatacatctagtaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtga 139  Q
    |||||||||||||||||    ||||||||| |||||||| ||| |  |||||| |||||||  || ||| |  ||||  | | || |||||||| ||||     
T  7432383 aagtgaaggttcatacactgggtaccaattattggaaaatcatccctgagtttccttttggcggtgtccctattgagagaacgggaaaatttgtaagtgg 7432284  T
Q  140 cacaattaattggttggccgttattgattttgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgctt 239  Q
    |||||||||||||||| ||  |||||| ||| || ||  |||||||  ||||||| |||||| |||||||| ||| || || |||||| |||| |||||     
T  7432283 cacaattaattggttgacctctattgaattttatagggaaagtccatactttattgtttcttatgatttggggaaggaatcatatcaagaggttttgcta 7432184  T
Q  240 cctgatt 246  Q
    |||||||    
T  7432183 cctgatt 7432177  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 2678582 - 2678541
Alignment:
Q  189 tttattatttcttttgatttggagaaagagtcttatcaaaag 230  Q
    |||||| |||||||||||||||  ||||||||||||||||||    
T  2678582 tttattgtttcttttgatttggcaaaagagtcttatcaaaag 2678541  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 3754460 - 3754509
Alignment:
Q  181 gtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 230  Q
    |||||||||||||| |||||||||||||||  || ||||| |||||||||    
T  3754460 gtccacgctttattgtttcttttgatttggcaaaggagtcatatcaaaag 3754509  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 4142328 - 4142279
Alignment:
Q  181 gtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 230  Q
    ||||| |||||||| |||||||||||||||  || |||||||||||||||    
T  4142328 gtccatgctttattgtttcttttgatttggcaaaggagtcttatcaaaag 4142279  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 246
Target Start/End: Complemental strand, 1078511 - 1078304
Alignment:
Q  39 gaagtgaaggttcatacatctagtaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtg 138  Q
    ||||||||| |||||||||   ||||||||| |||||||| |||||| |||||| ||||||||  | |||    ||  ||||| || |||||| ||||||    
T  1078511 gaagtgaagattcatacattgggtaccaattcttggaaaagcattcaagagtttccttttggtgttgtcccaattggacaatctggaaaatttctgagtg 1078412  T
Q  139 acacaattaattggttggccgttattgattttgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgct 238  Q
     ||| |||||||||||| ||  ||||||| |  |  |   |||||| ||||||||| |||||||||||||||  ||||| |||||||||||||| ||||     
T  1078411 gcacgattaattggttgacctctattgatctccaacgagaaagtcctcgctttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcc 1078312  T
Q  239 tcctgatt 246  Q
    ||||||||    
T  1078311 tcctgatt 1078304  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 24723212 - 24723267
Alignment:
Q  191 tattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgatt 246  Q
    |||| ||||| ||||||||||||| |||||||||||| || |||| ||||||||||    
T  24723212 tattgtttctcttgatttggagaaggagtcttatcaagagctatttcttcctgatt 24723267  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 1427878 - 1427824
Alignment:
Q  187 gctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcc 241  Q
    |||||||| || |||||||||||| ||| ||||||||||||||||| ||||||||    
T  1427878 gctttattgttgcttttgatttggggaaggagtcttatcaaaaggttttgcttcc 1427824  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 2067265 - 2067212
Alignment:
Q  177 agaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 230  Q
    |||| |||| |||||||| |||| | |||||||| |||||||||||||||||||    
T  2067265 agaaatccaagctttattgtttcatatgatttggggaaagagtcttatcaaaag 2067212  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 20019962 - 20019896
Alignment:
Q  179 aagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgat 245  Q
    |||| ||| ||||||| |||||||||||||||||||||| | || || |||||| |||| |||||||    
T  20019962 aagtgcactctttattgtttcttttgatttggagaaagaattttgtcgaaaggttttgcctcctgat 20019896  T

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