View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6107_high_5 (Length: 246)
Name: NF6107_high_5
Description: NF6107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6107_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 39522147 - 39522371
Alignment:
| Q |
1 |
tgctattcatagaagttggtagaagtagggagtggagaagagaaggggaaccaatgatgaagaagacatagataagaggaagactttagctgtggactgg |
100 |
Q |
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| T |
39522147 |
tgctattcatagaagttggtagaagtagggagtggagaagagaaggggaaccaatgatgaagaagacatagataagaggaagactttagctgtggactgg |
39522246 |
T |
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| Q |
101 |
ttaagtcgtcacctttgaattttcttatttcttgtttgtttctctctttaattttaaatataaataaaatatttgaaagttgatttatcacctaccaata |
200 |
Q |
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| T |
39522247 |
ttaagtcgtcacctttgaattttcttatttcttgtttgtttctctctttaattttaaatataaataaaatatttgaaagttgatttatcacctaccaata |
39522346 |
T |
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| Q |
201 |
ccatgactatagtataacacactct |
225 |
Q |
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| T |
39522347 |
ccatgactatagtataacacactct |
39522371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 39581313 - 39581459
Alignment:
| Q |
1 |
tgctattcatagaagttggtagaagtagggagtgg-agaagagaagggga--accaatgatgaagaagacatagataagaggaagactttagctgtggac |
97 |
Q |
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| T |
39581313 |
tgctattcatagaagttagtagaagtagggagtgggagaagagaagggggggaccaatga---agaagacttgcataagaagaagactctatctgtggac |
39581409 |
T |
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| Q |
98 |
tgg--ttaagtcgtcacctttgaattttcttatttcttgtttgtttctct |
145 |
Q |
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| T |
39581410 |
tgtgattaagttgtccgctttgaattttctttttccttatttgtttctct |
39581459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 39571647 - 39571722
Alignment:
| Q |
70 |
agataagaggaagactttagctgtggactg--gttaagtcgtcacctttgaattttcttatttcttgtttgtttct |
143 |
Q |
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| T |
39571647 |
agataagaggaagacttaagccgtggagtgtggttaagtcgtcagctttggattttcttcttccttgtttgtttct |
39571722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 39576831 - 39576906
Alignment:
| Q |
70 |
agataagaggaagactttagctgtggactg--gttaagtcgtcacctttgaattttcttatttcttgtttgtttct |
143 |
Q |
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| T |
39576831 |
agataagaggaagacttaagccgtggagtgtggttaagtctttagctttggattttcttcttccttgtttgtttct |
39576906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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