View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6107_low_3 (Length: 321)
Name: NF6107_low_3
Description: NF6107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6107_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 39522119 - 39521870
Alignment:
| Q |
20 |
tcatcaaacaaacacaattttcctctctcactatgtcaacctttcacttccacacaattcaacgctctatctttctacttgcnnnnnnncttcaattctc |
119 |
Q |
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| T |
39522119 |
tcatcaaacaaacacaattttcctctctcaccatgtcaacctttcacttccacacaattcaacgctctatctttctccttgctttttttcttcaattctc |
39522020 |
T |
|
| Q |
120 |
atcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaataacaaccattatatt |
219 |
Q |
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| T |
39522019 |
atcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatatcgacgtgaatgaaaataacaacctttatatt |
39521920 |
T |
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| Q |
220 |
ggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactc |
269 |
Q |
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| T |
39521919 |
ggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactc |
39521870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 109 - 263
Target Start/End: Complemental strand, 39576675 - 39576521
Alignment:
| Q |
109 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaataaca |
208 |
Q |
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| T |
39576675 |
cttcaattctcatcactacacttccctgcactcggatacgatcatcaagagacatacttcatcaattgtggatcagatatcgacgtgaatgaaaataaga |
39576576 |
T |
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| Q |
209 |
accattatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaag |
263 |
Q |
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| T |
39576575 |
atctttatattggtgaatcaaaccatgcttaccctaaaaaatcattcagccaaag |
39576521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 39544820 - 39544682
Alignment:
| Q |
109 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaataaca |
208 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||| |||||||||||| |
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| T |
39544820 |
cttcaattcgcatcattacaatttccctcactcggatacgatcaccaagacacatacttcatcaattgcggatcagatattgacgtgaatgaaaataaca |
39544721 |
T |
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| Q |
209 |
accattatattggtgaatcaaaccatgcttacccgaaaa |
247 |
Q |
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||| |||||||||||||||||||| | ||||||| |||| |
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| T |
39544720 |
acctttatattggtgaatcaaaccctacttacccaaaaa |
39544682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 39581216 - 39581075
Alignment:
| Q |
109 |
cttcaattctcatcattacaattcccctcactcggat---acgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaata |
205 |
Q |
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||||||||||||||||||||||| |||| ||||||| | |||| ||| ||||||||||||||||||| ||||||||| | || || ||||| || |
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| T |
39581216 |
cttcaattctcatcattacaattttcctcgctcggattatataatccccaacacacatacttcatcaattgcggatcagattttgatgttactgaaagta |
39581117 |
T |
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| Q |
206 |
acaaccattatattggtgaatcaaaccatgcttacccgaaaa |
247 |
Q |
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||||| |||||||||||||||||||| | |||| ||||||| |
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| T |
39581116 |
acaacgtttatattggtgaatcaaaccctacttatccgaaaa |
39581075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 39525529 - 39525453
Alignment:
| Q |
110 |
ttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagat |
186 |
Q |
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||||||||||||||||| | |||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||| |
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| T |
39525529 |
ttcaattctcatcattatacttcccctcgctcggatacgatgaacaagacatatacttcatcagttgtggatcagat |
39525453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 39581927 - 39581850
Alignment:
| Q |
109 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagat |
186 |
Q |
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|||||||||||||||||||| ||| ||||||| ||||||||| ||||||| ||||||||||| |||||||| |||| |
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| T |
39581927 |
cttcaattctcatcattacagttcgcctcacttggatacgatgaccaagacatatacttcatcagttgtggataagat |
39581850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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