View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6108_high_1 (Length: 667)
Name: NF6108_high_1
Description: NF6108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6108_high_1 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 14 - 652
Target Start/End: Complemental strand, 22059 - 21418
Alignment:
| Q |
14 |
gaacattaacaaaaccaatgttttaatccaaacaatcaaattaatttctttcacatataaccaatggttaagttgctcnnnnnnnnnnnnntaa-ccaat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
22059 |
gaacattaacaaaaccaatgttttaatccaaacaatcaaattaatttctttcacatataaccaatggttaagttgctcaaaaaaaaaaaaagaaaccaat |
21960 |
T |
|
| Q |
113 |
ggttaagataattaaatcaatcaatcataacgtaacttaaactctttatccattagtcaatcgtagtttaatttaannnnnnnnnnatccctactttgtt |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21959 |
ggttaagataattaaatcaatcaatcataacgtaacttaatctctttatccattagtcaatcgtagtttaatttaattttttttttatccctactttgtt |
21860 |
T |
|
| Q |
213 |
caaaactagaagagaaaggatgtgtttaaaaaagacttgctaaaagaagttcaaggatagtcaacatgactagcattttctcaaaatttccaacatgttg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
21859 |
caaaactagaagagaaaggatgtgtttaaaaaagacttgctaaaagaagttcaaggataatcaacatgactcgcattttctcaaaatttccaacatgttg |
21760 |
T |
|
| Q |
313 |
aggcaactccttcataattcattcaataacacacataacaataaaattctcagaatttttcagtttttacaaatacatgaaatctgagatgaattttcag |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21759 |
aggcaactccttcataattcattcaataacacacataacaataaaattctcagaatttttcagtttttacaaatacatgaaatctgagatgaattttcag |
21660 |
T |
|
| Q |
413 |
tatagataagaaagaa--ctctgtgtggaaagaaaagaacataattcttttccctgaacaattttcacaaattcataagctatgtaatgcaatgatcaat |
510 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21659 |
tatagataagaaagaactctctctgtggaaagaaaagaacataattcttttccctgaacaattttcacaaattcataagctatgtaatgcaatgatcaat |
21560 |
T |
|
| Q |
511 |
ataaaacaaagcagaagtgtagtttatgatcaaccgtcattcttggcattgacattaaacaagaagcaccggtctcgtctacatcctcattttccagagc |
610 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21559 |
ataaaacaaagcaaaagtgtagtttatgatcaaccgtcattcttggcattgacattaaacaagaagcaccggtctcgtctacatcctcattttccggagc |
21460 |
T |
|
| Q |
611 |
aatgccagaggactctagcttcacacccacattggtcaaatt |
652 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21459 |
aatgccagaggactctagcttcgcacccacattggtcaaatt |
21418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 6e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 246 - 421
Target Start/End: Original strand, 10439972 - 10440147
Alignment:
| Q |
246 |
gacttgctaaaagaagttcaaggatagtcaacatgactagcattttctcaaaatttccaacatgttgaggcaactccttcataattcattcaataacaca |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
10439972 |
gacttgctaaaagaagttcaaggatagtcaacatgactcgcattttctcaaaatttcctacatgttgaggcaactccttcagaattcattcaataacaca |
10440071 |
T |
|
| Q |
346 |
cataacaataaaattctcagaatttttcag-tttttacaaatacatgaaatctgagatgaattttcagtatagataa |
421 |
Q |
| |
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|||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10440072 |
cataacaataaaattctcagaa-ttttcagttttttacaaatatatgaaatctgagatgaattttcagtatagataa |
10440147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 10439874 - 10439953
Alignment:
| Q |
105 |
taaccaatggttaaga-taattaaatcaatcaatcataacgtaacttaaactctttatccattagtcaatcgtagtttaa |
183 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
10439874 |
taaccaatggttaagaataatttaattaatcaatcataacgtaacttaatctctttatccattattcaatcgtagtttaa |
10439953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 10439832 - 10439888
Alignment:
| Q |
29 |
caatgttttaatccaaacaatcaaattaatttctttcacatataaccaatggttaag |
85 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10439832 |
caattttttaatccaaacaatcaaattaatttctttcacatttaaccaatggttaag |
10439888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 2e-63; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 17306018 - 17305871
Alignment:
| Q |
202 |
cctactttgttcaaaactagaagagaaaggatgtgtttaaaaaagacttgctaaaagaagttcaaggatagtcaacatgactagcattttctcaaaattt |
301 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
17306018 |
cctactttgttcaaaacaagaacagaaaggatgtgcttaaaaaagacttgctaaaagaagttcaaggatagtcaacatgacttgcattttctcaaaattt |
17305919 |
T |
|
| Q |
302 |
ccaacatgttgaggcaactccttcataattcattcaataacacacata |
349 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17305918 |
tcaacatgttgaggcaactccttcatagttcattcaataacacacata |
17305871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 17306646 - 17306793
Alignment:
| Q |
202 |
cctactttgttcaaaactagaagagaaaggatgtgtttaaaaaagacttgctaaaagaagttcaaggatagtcaacatgactagcattttctcaaaattt |
301 |
Q |
| |
|
||||||||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
17306646 |
cctactttgttcaaaacaagaacaggaaggatgtgcttaaaaaagacttgctaaaagaagttcaaggatagtcaacatgacttgcattttctcaaaattt |
17306745 |
T |
|
| Q |
302 |
ccaacatgttgaggcaactccttcataattcattcaataacacacata |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17306746 |
tcaacatgttgaggcaactccttcataattcattcaataacacacata |
17306793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 204 - 349
Target Start/End: Original strand, 17324557 - 17324702
Alignment:
| Q |
204 |
tactttgttcaaaactagaagagaaaggatgtgtttaaaaaagacttgctaaaagaagttcaaggatagtcaacatgactagcattttctcaaaatttcc |
303 |
Q |
| |
|
||||||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
17324557 |
tactttgttcaaaacaagaacaggaaggatgtgcttaaaaaagacttgctaaaagaagttcaaggatagtcaacatgacttgcattttctcaaaattttc |
17324656 |
T |
|
| Q |
304 |
aacatgttgaggcaactccttcataattcattcaataacacacata |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17324657 |
aacatgttgaggcaactccttcataattcattcaataacacacata |
17324702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 204 - 349
Target Start/End: Original strand, 17330335 - 17330480
Alignment:
| Q |
204 |
tactttgttcaaaactagaagagaaaggatgtgtttaaaaaagacttgctaaaagaagttcaaggatagtcaacatgactagcattttctcaaaatttcc |
303 |
Q |
| |
|
||||||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
17330335 |
tactttgttcaaaacaagaacaggaaggatgtgcttaaaaaagacttgctaaaagaagttcaaggatagtcaacatgacttgcattttctcaaaattttc |
17330434 |
T |
|
| Q |
304 |
aacatgttgaggcaactccttcataattcattcaataacacacata |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17330435 |
aacatgttgaggcaactccttcataattcattcaataacacacata |
17330480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 17328603 - 17328458
Alignment:
| Q |
202 |
cctactttgttcaaaactagaagagaaaggatgtgtttaaaaaagacttgctaaaagaagttcaaggatagtcaacatgactagcattttctcaaaattt |
301 |
Q |
| |
|
||||||||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
17328603 |
cctactttgttcaaaacaagaacaggaaggatgtgcttaaaaaagacttgctaaaagaagttcaaggatagtcaacatgacttgcattttctcaaaattt |
17328504 |
T |
|
| Q |
302 |
ccaacatgttgaggcaactccttcataattcattcaataacacacata |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17328503 |
--aacatgttgaggcaactccttcataattcattcaataacacacata |
17328458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 17322825 - 17322680
Alignment:
| Q |
202 |
cctactttgttcaaaactagaagagaaaggatgtgtttaaaaaagacttgctaaaagaagttcaaggatagtcaacatgactagcattttctcaaaattt |
301 |
Q |
| |
|
||||||||||||||||| |||| || || |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
17322825 |
cctactttgttcaaaacaagaacaggaacgatgtgcttaaaaaagacttgctaaaagaagttcaaggatagtcaacatgacttgcattttctcaaaattt |
17322726 |
T |
|
| Q |
302 |
ccaacatgttgaggcaactccttcataattcattcaataacacacata |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17322725 |
--aacatgttgaggcaactccttcataattcattcaataacacacata |
17322680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 577 - 652
Target Start/End: Original strand, 34570860 - 34570935
Alignment:
| Q |
577 |
caccggtctcgtctacatcctcattttccagagcaatgccagaggactctagcttcacacccacattggtcaaatt |
652 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||||||| |||||||| ||| ||||| |||| ||||||||||||| |
|
|
| T |
34570860 |
caccagtctcgtctacatcctcatcttccggagcaataccagaggattctggcttcgcaccagcattggtcaaatt |
34570935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 52549654 - 52549609
Alignment:
| Q |
36 |
ttaatccaaacaatcaaattaatttctttcacatataaccaatggt |
81 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
52549654 |
ttaatcctaacaatcaaactaaattctttcacatatgaccaatggt |
52549609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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