View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6108_high_4 (Length: 348)
Name: NF6108_high_4
Description: NF6108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6108_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 84 - 342
Target Start/End: Original strand, 29287105 - 29287366
Alignment:
| Q |
84 |
tagagaatctaaattgaacaagggacaaatttaagctactgcatttaagtttgaaaattttcataaaattaagtattgtttcatatatgaactttgataa |
183 |
Q |
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| T |
29287105 |
tagagaatctaaattgaacaagggacaaatttaagctactgcatttaagtttgaaaattttcataaaattaaatattgtttcatatatgaactttgataa |
29287204 |
T |
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| Q |
184 |
cacattgcacatgccataaacacgatt-gggtgacccatttgatgatattgatctttgaccagtaggatttggatcatttgctcccctcctacattcctt |
282 |
Q |
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| T |
29287205 |
cacattgcacatgccataaacacgattggggtgacccatttgatgatactgatctttgattagtaggatttggattatttgctcccctcctacactcctt |
29287304 |
T |
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| Q |
283 |
gcatattttatg--tctatctatctcatcatcgtctcttcattttttccgtcacattcacaa |
342 |
Q |
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| T |
29287305 |
gcatattttatgtctctatctatctcatcatcgtctcttcattttttccatcacattcacaa |
29287366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29284777 - 29284859
Alignment:
| Q |
1 |
ctattttcttagtcaaaatgtgcacgagaggctagtaaatgagaaaaggtgtaaaaataaggtttaaatcgcacaattgcaac |
83 |
Q |
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| T |
29284777 |
ctattttcttagtcaaaatgtgcacgagaggctagtaaatgagaaaaggggtaaaaataaggtttaaatcgcacaattgcaac |
29284859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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