View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6108_high_7 (Length: 257)

Name: NF6108_high_7
Description: NF6108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6108_high_7
NF6108_high_7
[»] chr8 (26 HSPs)
chr8 (12-256)||(20174525-20174771)
chr8 (12-256)||(20219251-20219498)
chr8 (34-88)||(42885995-42886049)
chr8 (19-88)||(30439486-30439557)
chr8 (27-69)||(2733027-2733069)
chr8 (16-88)||(22706218-22706292)
chr8 (35-88)||(41541877-41541930)
chr8 (27-88)||(6968221-6968284)
chr8 (19-88)||(7586142-7586213)
chr8 (45-88)||(37657009-37657052)
chr8 (17-69)||(36531634-36531688)
chr8 (27-85)||(36885477-36885535)
chr8 (35-88)||(28646691-28646744)
chr8 (35-88)||(28651275-28651328)
chr8 (16-67)||(8645206-8645258)
chr8 (19-66)||(32843922-32843970)
chr8 (19-74)||(12898909-12898967)
chr8 (45-88)||(32954860-32954903)
chr8 (16-69)||(29440500-29440554)
chr8 (27-88)||(42569718-42569780)
chr8 (35-69)||(42768244-42768278)
chr8 (19-66)||(16613676-16613725)
chr8 (19-69)||(4658243-4658295)
chr8 (16-68)||(5740762-5740817)
chr8 (16-88)||(39211061-39211136)
chr8 (19-69)||(41159869-41159921)
[»] chr7 (18 HSPs)
chr7 (12-256)||(44303763-44304010)
chr7 (19-88)||(7817657-7817727)
chr7 (16-88)||(3062350-3062424)
chr7 (27-88)||(36019437-36019498)
chr7 (16-87)||(41399140-41399213)
chr7 (27-88)||(11352963-11353025)
chr7 (16-88)||(42926160-42926233)
chr7 (27-88)||(3937110-3937173)
chr7 (19-88)||(3293149-3293220)
chr7 (19-88)||(47078231-47078302)
chr7 (16-69)||(34757448-34757500)
chr7 (45-88)||(33224843-33224886)
chr7 (35-69)||(12634431-12634465)
chr7 (35-88)||(21347317-21347368)
chr7 (19-66)||(13162961-13163010)
chr7 (35-72)||(26041875-26041912)
chr7 (16-88)||(31274517-31274592)
chr7 (19-69)||(44184539-44184591)
[»] chr5 (15 HSPs)
chr5 (16-88)||(9226321-9226394)
chr5 (19-88)||(15953025-15953096)
chr5 (27-88)||(1839334-1839396)
chr5 (39-88)||(31284397-31284446)
chr5 (17-88)||(42267365-42267439)
chr5 (27-88)||(3640186-3640248)
chr5 (35-88)||(2224810-2224863)
chr5 (16-69)||(19481159-19481214)
chr5 (27-88)||(34270347-34270409)
chr5 (16-68)||(34888786-34888839)
chr5 (39-88)||(35649990-35650039)
chr5 (19-69)||(189683-189735)
chr5 (19-69)||(6517751-6517803)
chr5 (19-69)||(20770170-20770222)
chr5 (19-69)||(41175686-41175738)
[»] chr1 (38 HSPs)
chr1 (17-88)||(36494483-36494556)
chr1 (19-88)||(44632548-44632619)
chr1 (26-88)||(8200095-8200158)
chr1 (27-88)||(48220133-48220195)
chr1 (35-88)||(32319307-32319360)
chr1 (35-88)||(33358157-33358210)
chr1 (19-81)||(36673711-36673775)
chr1 (19-88)||(18336166-18336237)
chr1 (19-88)||(19969542-19969613)
chr1 (19-88)||(50781550-50781621)
chr1 (16-69)||(7171214-7171268)
chr1 (27-88)||(49241494-49241556)
chr1 (16-68)||(51466808-51466861)
chr1 (45-88)||(45065910-45065953)
chr1 (43-88)||(1690454-1690499)
chr1 (35-85)||(23621426-23621474)
chr1 (35-85)||(23738205-23738253)
chr1 (16-69)||(32915049-32915104)
chr1 (35-85)||(6143706-6143756)
chr1 (35-69)||(30735292-30735326)
chr1 (17-69)||(47214247-47214301)
chr1 (27-69)||(52267242-52267284)
chr1 (16-69)||(6693199-6693251)
chr1 (39-88)||(16836118-16836167)
chr1 (27-69)||(24806210-24806254)
chr1 (39-88)||(27687522-27687571)
chr1 (16-69)||(30745025-30745081)
chr1 (16-69)||(30766476-30766532)
chr1 (39-88)||(40596057-40596106)
chr1 (39-88)||(41507197-41507246)
chr1 (19-88)||(48624892-48624967)
chr1 (39-68)||(50884757-50884786)
chr1 (19-69)||(3226040-3226092)
chr1 (16-66)||(8411695-8411747)
chr1 (19-69)||(10890026-10890078)
chr1 (19-69)||(13489701-13489753)
chr1 (19-69)||(50824780-50824832)
chr1 (19-69)||(52362521-52362573)
[»] chr4 (30 HSPs)
chr4 (16-88)||(17683367-17683441)
chr4 (27-88)||(4949526-4949587)
chr4 (19-88)||(28657421-28657492)
chr4 (19-88)||(31657666-31657737)
chr4 (27-88)||(43769731-43769793)
chr4 (35-88)||(39312614-39312667)
chr4 (27-66)||(32546347-32546386)
chr4 (16-69)||(9362656-9362710)
chr4 (16-88)||(17683244-17683318)
chr4 (27-88)||(26718388-26718450)
chr4 (27-88)||(26731016-26731078)
chr4 (16-69)||(33860686-33860740)
chr4 (19-88)||(54802656-54802727)
chr4 (19-88)||(55601681-55601752)
chr4 (38-88)||(5386392-5386442)
chr4 (27-64)||(14010107-14010145)
chr4 (35-69)||(39478473-39478507)
chr4 (31-69)||(40609649-40609687)
chr4 (27-88)||(52846216-52846278)
chr4 (38-88)||(54036531-54036581)
chr4 (16-88)||(42667226-42667299)
chr4 (19-66)||(46405954-46406003)
chr4 (39-88)||(48326560-48326609)
chr4 (36-68)||(1562536-1562568)
chr4 (16-66)||(21617225-21617277)
chr4 (19-69)||(28458357-28458409)
chr4 (19-69)||(30170000-30170052)
chr4 (19-69)||(38338902-38338954)
chr4 (27-66)||(47965781-47965821)
chr4 (16-66)||(51887705-51887757)
[»] chr3 (26 HSPs)
chr3 (16-88)||(24645376-24645450)
chr3 (19-88)||(49761327-49761398)
chr3 (16-88)||(26672420-26672492)
chr3 (16-88)||(28430750-28430823)
chr3 (19-88)||(51465894-51465965)
chr3 (16-69)||(20080112-20080166)
chr3 (16-84)||(29097531-29097601)
chr3 (38-88)||(43169755-43169805)
chr3 (35-88)||(11234211-11234264)
chr3 (35-88)||(54195359-54195412)
chr3 (27-88)||(1337828-1337890)
chr3 (27-88)||(3281705-3281767)
chr3 (27-88)||(21005165-21005227)
chr3 (27-88)||(32421618-32421680)
chr3 (58-88)||(37927238-37927268)
chr3 (28-69)||(46852122-46852164)
chr3 (19-66)||(390851-390900)
chr3 (39-88)||(28700480-28700529)
chr3 (28-88)||(36412144-36412204)
chr3 (35-88)||(39907544-39907597)
chr3 (35-88)||(48893362-48893415)
chr3 (19-69)||(46019501-46019553)
chr3 (16-67)||(49983329-49983381)
chr3 (16-66)||(50206947-50206999)
chr3 (36-68)||(51406369-51406401)
chr3 (19-69)||(55400038-55400090)
[»] chr2 (28 HSPs)
chr2 (19-88)||(42678769-42678840)
chr2 (19-88)||(42866770-42866841)
chr2 (16-69)||(7648430-7648484)
chr2 (27-88)||(36212049-36212110)
chr2 (19-88)||(26277115-26277186)
chr2 (42-88)||(2971820-2971866)
chr2 (27-88)||(3012835-3012897)
chr2 (19-86)||(40937044-40937113)
chr2 (35-88)||(42372499-42372552)
chr2 (45-88)||(6646843-6646886)
chr2 (19-88)||(10711744-10711815)
chr2 (45-88)||(32972915-32972958)
chr2 (16-57)||(4061939-4061981)
chr2 (35-69)||(12498634-12498668)
chr2 (27-84)||(23352894-23352952)
chr2 (16-69)||(30546347-30546401)
chr2 (27-69)||(9634425-9634468)
chr2 (58-88)||(28679324-28679354)
chr2 (19-69)||(31578473-31578526)
chr2 (39-68)||(2427980-2428009)
chr2 (19-74)||(29712012-29712069)
chr2 (16-67)||(34119629-34119682)
chr2 (19-73)||(2842861-2842917)
chr2 (19-69)||(5054647-5054699)
chr2 (19-69)||(6999048-6999100)
chr2 (39-75)||(7084756-7084792)
chr2 (19-69)||(14233699-14233751)
chr2 (19-69)||(28245767-28245819)
[»] chr6 (13 HSPs)
chr6 (19-88)||(28041794-28041865)
chr6 (16-69)||(2689042-2689096)
chr6 (42-88)||(28748132-28748178)
chr6 (27-88)||(5028255-5028317)
chr6 (27-88)||(14699653-14699715)
chr6 (27-88)||(14693241-14693303)
chr6 (27-69)||(23628399-23628441)
chr6 (27-69)||(24842407-24842449)
chr6 (19-66)||(754418-754467)
chr6 (39-88)||(2060636-2060685)
chr6 (19-66)||(3610941-3610990)
chr6 (19-69)||(18141281-18141333)
chr6 (19-69)||(20822848-20822900)
[»] scaffold0100 (1 HSPs)
scaffold0100 (47-88)||(44794-44835)
[»] scaffold0532 (1 HSPs)
scaffold0532 (16-69)||(11003-11058)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 20174771 - 20174525
Alignment:
Q  12 agagaaacaatagaggataaagtaaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatatgattactcnnnnnnnn--aatag 109  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||          |||||    
T  20174771 agagaaacaatagaggataaagtaaaaataatgtgagtatgagataaaaagttgtcaccaaatggatgttcaaatatgattactcttttttttttaatag 20174672  T
Q  110 aaaaaatgagcactatcacttatcaatctcaattaataaattgaaggtaactgattacgatcaggacaaatatcttctcttcctatcagttgtgacttga 209  Q
     ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20174671 gaaaaatgagcactatcacttatcaatctcaattaataaatttaagttaacagattacgatcaggacaaatatcttctcttcctatcagttgtgacttga 20174572  T
Q  210 actttcgtttgaaattcgaaaattgatagtctgttttaagtaaattt 256  Q
    |||||||||||||||||| ||| |||||||||| |||||||||||||    
T  20174571 actttcgtttgaaattcggaaagtgatagtctgctttaagtaaattt 20174525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 20219498 - 20219251
Alignment:
Q  12 agagaaacaatagaggataaagtaaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatatgattactcnnnnnnnn---aata 108  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||           ||||    
T  20219498 agagaaacaatagaggataaagtaaaaataatgtgagtatgagataaaaagttgtcaccaaatggatgttcaaatatgattactctttttttttttaata 20219399  T
Q  109 gaaaaaatgagcactatcacttatcaatctcaattaataaattgaaggtaactgattacgatcaggacaaatatcttctcttcctatcagttgtgacttg 208  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20219398 ggaaaaatgagcactatcacttatcaatctcaattaataaatttaagttaacagattacgatcaggacaaatatcttctcttcctatcagttgtgacttg 20219299  T
Q  209 aactttcgtttgaaattcgaaaattgatagtctgttttaagtaaattt 256  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||||||    
T  20219298 aactttcgtttgaaattcggaaagtgatagtctgctttaagtaaattt 20219251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 42886049 - 42885995
Alignment:
Q  34 taaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  42886049 taaaaataatatgaatatgagagagaaagttgtcaccaaatggatgttcaaatat 42885995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 30439486 - 30439557
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  30439486 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 30439557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 2733069 - 2733027
Alignment:
Q  27 gataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  2733069 gataaagtaaaaataatgtgagtatgagagaaaaagttgtcac 2733027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 22706218 - 22706292
Alignment:
Q  16 aaacaatagag-gataaagt-aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||| |||||||| ||||| ||| ||||||||||||| ||||||||||| |||||||| |||||||||    
T  22706218 aaacaatagagagataaagttaaaaacaatgtgagtatgagagataaagttgtcactaaatggatattcaaatat 22706292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 41541930 - 41541877
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  41541930 aaaaataatgtgagtataagagagaaagttgtcacaaaatggatgttcaaatat 41541877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 6968221 - 6968284
Alignment:
Q  27 gataaagtaaaaa--taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||||||||  |||| ||||||||||||| ||||||||||||| || |||||||||||||    
T  6968221 gataaagtaaaaaagtaatgtgagtatgagagagaaagttgtcaccagattgatgttcaaatat 6968284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 7586142 - 7586213
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||||| | | |||||||||||||||| |||||||||||||    
T  7586142 caatagagagataaagtaaaaaataatgtgagtatgaaaaagaaagttgtcaccaaatagatgttcaaatat 7586213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 37657052 - 37657009
Alignment:
Q  45 tgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||    
T  37657052 tgagtatgagagagaaagttgtcactaaatggatgttcaaatat 37657009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 36531688 - 36531634
Alignment:
Q  17 aacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  36531688 aacaatagagagataaagtaaaaaataatatgagtatgaaagaaaaagttgtcac 36531634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 36885477 - 36885535
Alignment:
Q  27 gataaagtaaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaa 85  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||  |||||||| ||||||    
T  36885477 gataaagtaaaaataatgtgagtatgagagagaaagtcgtcaaaaaatggatattcaaa 36885535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 28646744 - 28646691
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||| || ||||||||||||| |||||||||| ||||| |||||||||||||    
T  28646744 aaaaattatgtgagtatgagagagaaagttgtcatcaaatagatgttcaaatat 28646691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 28651328 - 28651275
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||| || ||||||||||||| |||||||||| ||||| |||||||||||||    
T  28651328 aaaaattatgtgagtatgagagagaaagttgtcatcaaatagatgttcaaatat 28651275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 8645258 - 8645206
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtc 67  Q
    ||||||||||| |||||||||||||| |||||||||||||||| ||| |||||    
T  8645258 aaacaatagagagataaagtaaaaatgatatgagtatgagagagaaaattgtc 8645206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 32843922 - 32843970
Alignment:
Q  19 caatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgt 66  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||    
T  32843922 caatagagagataaagtaaaaataatgtgagtaagagagaaaaagttgt 32843970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 12898909 - 12898967
Alignment:
Q  19 caatagag-gataaagtaaaaa--taatatgagtatgagagaaaaagttgtcaccaaat 74  Q
    |||||||| |||||||||||||  |||| ||||||||||||||||||||||||| ||||    
T  12898909 caatagagagataaagtaaaaagataatgtgagtatgagagaaaaagttgtcacaaaat 12898967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 32954903 - 32954860
Alignment:
Q  45 tgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  32954903 tgagtatcagagagaaagttgtcacaaaatggatgttcaaatat 32954860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 29440500 - 29440554
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| |||||||||||||| || ||||||||||| | |||||||||||    
T  29440500 aaacaatagagagataaagtaaaaatgatgtgagtatgagaaagaaagttgtcac 29440554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 42569718 - 42569780
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||| ||||||||| ||||||||||  ||||| ||||||||||||    
T  42569718 gataaagtaaaaagtaatgtgaatatgagagagaaagttgtcataaaatgaatgttcaaatat 42569780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 42768278 - 42768244
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||| |||||||||||||||||||||||||    
T  42768278 aaaaataatgtgagtatgagagaaaaagttgtcac 42768244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 16613725 - 16613676
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgt 66  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  16613725 caatagagagataaagtaaaaaataatgtgagtatgagagaaaaagttgt 16613676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 4658243 - 4658295
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| | |||||||||||||||||||||||    
T  4658243 caatagagagataaagtaaaaagtaatgtaagtatgagagaaaaagttgtcac 4658295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 5740762 - 5740817
Alignment:
Q  16 aaacaatagag-gataaagtaaaaa--taatatgagtatgagagaaaaagttgtca 68  Q
    ||||||||||| || ||||||||||  |||| ||||||||||||||||||||||||    
T  5740762 aaacaatagagagagaaagtaaaaacataatgtgagtatgagagaaaaagttgtca 5740817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 39211136 - 39211061
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatg--agtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||| || |||||||||| || |||  ||||||||||| ||||||||||  |||||| |||||||||||    
T  39211136 aaacaatagagagaaaaagtaaaaacaaaatgtgagtatgagagagaaagttgtcaaaaaatggttgttcaaatat 39211061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 41159869 - 41159921
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  41159869 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcac 41159921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 44304010 - 44303763
Alignment:
Q  12 agagaaacaatagaggataaagtaaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatatgattactcnnnnnnnn---aata 108  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||           ||||    
T  44304010 agagaaacaatagaggataaagtaaaaataatgtgagtatgagataaaaagttgtcaccaaatggatgttcaaatatgattactctttttttttttaata 44303911  T
Q  109 gaaaaaatgagcactatcacttatcaatctcaattaataaattgaaggtaactgattacgatcaggacaaatatcttctcttcctatcagttgtgacttg 208  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44303910 ggaaaaatgagcactatcacttatcaatctcaattaataaatttaagttaacagattacgatcaggacaaatatcttctcttcctatcagttgtgacttg 44303811  T
Q  209 aactttcgtttgaaattcgaaaattgatagtctgttttaagtaaattt 256  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||||||    
T  44303810 aactttcgtttgaaattcggaaagtgatagtctgctttaagtaaattt 44303763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 7817727 - 7817657
Alignment:
Q  19 caatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  7817727 caatagagagataaagtaaaaataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 7817657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 3062424 - 3062350
Alignment:
Q  16 aaacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||| ||||||||||||| |||| ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  3062424 aaacaatagagagataaagtaaaaagtaatgtgagtataagagagaaagttgtcacaaaatggatgttcaaatat 3062350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 36019498 - 36019437
Alignment:
Q  27 gataaagtaaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||||||| ||||||||||||| |||||||||  |||||| ||||||||||||    
T  36019498 gataaagtaaaaataatgtgagtatgagagagaaagttgtcgtcaaatgaatgttcaaatat 36019437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 41399140 - 41399213
Alignment:
Q  16 aaacaatagag-gataaagtaaaa-ataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaata 87  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| |||||| |||| |||| ||||||||||||    
T  41399140 aaacaatagagagataaagtaaaaaataatatgagtatgagagataaagttatcacaaaatagatgttcaaata 41399213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 11352963 - 11353025
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||| |||| |||||||||||||    
T  11352963 gataaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaattgatgttcaaatat 11353025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 42926233 - 42926160
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||| |||||||||||||| |||| | ||||||||| ||||||||||||||||  || |||||||||    
T  42926233 aaacaatagagagataaagtaaaaatgatatcaatatgagagagaaagttgtcaccaaataaatattcaaatat 42926160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 3937110 - 3937173
Alignment:
Q  27 gataaagtaaaaa--taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||||||||  |||| ||||||||||||| ||||||||||| |||| |||||||||||||    
T  3937110 gataaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaatagatgttcaaatat 3937173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 3293220 - 3293149
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| | || ||| ||||||||| ||||||||||||||||| ||||||||||||    
T  3293220 caatagagagataaagtaaaaaattatgtgaatatgagagagaaagttgtcaccaaatgaatgttcaaatat 3293149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 47078231 - 47078302
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||||||  |||| |||||||||||||    
T  47078231 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcataaaatagatgttcaaatat 47078302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 34757448 - 34757500
Alignment:
Q  16 aaacaatagaggataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| ||||| |||||||||||||||||||||||| | |||||||||    
T  34757448 aaacaatagag-ataaattaaaaataatatgagtatgagagagagagttgtcac 34757500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 33224886 - 33224843
Alignment:
Q  45 tgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||    
T  33224886 tgagtatgagagagaaagttgtcacaaaatagatgttcaaatat 33224843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 12634431 - 12634465
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||||||||||||||| |||||||||||    
T  12634431 aaaaataatatgagtatgagagataaagttgtcac 12634465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 21347317 - 21347368
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||| |||||||||||||||  |||||||| |||||||| |||||||||    
T  21347317 aaaaataatgtgagtatgagagaaa--gttgtcacaaaatggatcttcaaatat 21347368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 13163010 - 13162961
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgt 66  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||||||||    
T  13163010 caatagagagataaagtaaaaagtaatatgagtatgagagagaaagttgt 13162961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 26041875 - 26041912
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaa 72  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  26041875 aaaaataatgtgagtatgagagagaaagttgtcaccaa 26041912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 31274517 - 31274592
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataa--tatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||| || |||||||||||||  | ||||||| ||||||||||||||||| || ||| ||| |||||||    
T  31274517 aaacaatagagagagaaagtaaaaataaagtgtgagtataagagaaaaagttgtcacaaattggttgtacaaatat 31274592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 44184539 - 44184591
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  44184539 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcac 44184591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 9226394 - 9226321
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||  ||||||||||||||||||    
T  9226394 aaacaatagagagataaagtaaaaataatgtgagtatgagagagaaagttgtcattaaatggatgttcaaatat 9226321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 15953025 - 15953096
Alignment:
Q  19 caatagag-gataaagtaaaa-ataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  15953025 caatagagagataaagtaaaaaataatatgagtatgagagaaaaagttgtcacaaaatagatgttcaaatat 15953096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 1839334 - 1839396
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  1839334 gataaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 1839396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 31284397 - 31284446
Alignment:
Q  39 ataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  31284397 ataatatgagtatgagagagaaagttgtcacaaaatggatgtacaaatat 31284446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 42267439 - 42267365
Alignment:
Q  17 aacaatagag-gataaagtaaaaata--atatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||||| |||||||||||||||  || || |||||||||||||||||||||| ||||| ||| ||||||||    
T  42267439 aacaatagagagataaagtaaaaatataatgtgtgtatgagagaaaaagttgtcactaaatgaatgatcaaatat 42267365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 3640186 - 3640248
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||||||||| ||||||||| | |||| |||||||||||||    
T  3640186 gataaagtaaaaaataatgtgagtatgagagagaaagttgtctcaaaatagatgttcaaatat 3640248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 2224863 - 2224810
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||| | ||||||||||| ||| |||||||||||| |||||||||||||    
T  2224863 aaaaataatgtaagtatgagagataaaattgtcaccaaatagatgttcaaatat 2224810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 19481159 - 19481214
Alignment:
Q  16 aaacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  19481159 aaacaatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcac 19481214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 34270409 - 34270347
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| ||||  |||||||||||| ||| ||||||| || |||||||||||||||    
T  34270409 gataaagtaaaaaataatgggagtatgagagagaaaattgtcacaaagtggatgttcaaatat 34270347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 34888786 - 34888839
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtca 68  Q
    ||||||||||| ||||||||||||||||| ||||| ||| ||| ||||||||||    
T  34888786 aaacaatagagagataaagtaaaaataatgtgagtgtgaaagagaaagttgtca 34888839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 35649990 - 35650039
Alignment:
Q  39 ataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||| ||||||||||||||||||||||||  |||| | |||||||||||    
T  35649990 ataatgtgagtatgagagaaaaagttgtcaaaaaatagttgttcaaatat 35650039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 189683 - 189735
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  189683 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcac 189735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 6517803 - 6517751
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  6517803 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcac 6517751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 20770222 - 20770170
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  20770222 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcac 20770170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 41175686 - 41175738
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  41175686 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcac 41175738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 36494556 - 36494483
Alignment:
Q  17 aacaatagag-gataaagt-aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  36494556 aacaatagagagataaagtgaaaaataatatgagtatgagagagaaagttgtcactaaatggatgttcaaatat 36494483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 44632619 - 44632548
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  44632619 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcaccaaatggatgttcaaatat 44632548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 8200158 - 8200095
Alignment:
Q  26 ggataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  8200158 ggataaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 8200095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 48220133 - 48220195
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  48220133 gataaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 48220195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 32319307 - 32319360
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||    
T  32319307 aaaaataatgtgagtatgagagagaaagttgtcaccaaatggatgtttaaatat 32319360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 33358157 - 33358210
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  33358157 aaaaataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 33358210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 36673711 - 36673775
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgtt 81  Q
    |||||||| ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  36673711 caatagagagataaagtaaaaaataacatgagtatgagagagaaagttgtcaccaaatggatgtt 36673775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 18336237 - 18336166
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||||||| ||||| ||||||||||||    
T  18336237 caatagagagataaagtaaaaactaatgtgagtatgagagagaaagttgtcacaaaatgaatgttcaaatat 18336166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 19969542 - 19969613
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||||||  ||||||||||||||||||    
T  19969542 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcataaaatggatgttcaaatat 19969613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 50781550 - 50781621
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||||||  ||||||||||||||||||    
T  50781550 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcataaaatggatgttcaaatat 50781621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 7171214 - 7171268
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||    
T  7171214 aaacaatagagagataaagtaaaaataatgtgagtatgagagataaagttgtcac 7171268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 49241494 - 49241556
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||| || |||||||||||||||    
T  49241494 gataaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaagtggatgttcaaatat 49241556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 51466861 - 51466808
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtca 68  Q
    ||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||    
T  51466861 aaacaatagagagataaagtaaaaataatgtgagtatgaaagaaaaagttgtca 51466808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 45065910 - 45065953
Alignment:
Q  45 tgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||    
T  45065910 tgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 45065953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 1690499 - 1690454
Alignment:
Q  43 tatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||||||||||||||||| |||||| ||| |||||||    
T  1690499 tatgagtatgagagaaaaagttgtcacaaaatggttgtacaaatat 1690454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 23621426 - 23621474
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaa 85  Q
    ||||||||| |||||||||||||||  |||||||| |||||||||||||||    
T  23621426 aaaaataatgtgagtatgagagaaa--gttgtcacaaaatggatgttcaaa 23621474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 23738205 - 23738253
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaa 85  Q
    ||||||||| |||||||||||||||  |||||||| |||||||||||||||    
T  23738205 aaaaataatgtgagtatgagagaaa--gttgtcacaaaatggatgttcaaa 23738253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 32915049 - 32915104
Alignment:
Q  16 aaacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  32915049 aaacaatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcac 32915104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 6143756 - 6143706
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaa 85  Q
    ||||||||| | ||||||||||| ||||||||||| || ||||||||||||    
T  6143756 aaaaataatgtaagtatgagagagaaagttgtcacaaagtggatgttcaaa 6143706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 30735292 - 30735326
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||| |||||||||||||||||||||||||    
T  30735292 aaaaataatgtgagtatgagagaaaaagttgtcac 30735326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 47214301 - 47214247
Alignment:
Q  17 aacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  47214301 aacaatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcac 47214247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 52267284 - 52267242
Alignment:
Q  27 gataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    |||||| |||||||||| ||||||||||||| |||||||||||    
T  52267284 gataaaataaaaataatgtgagtatgagagagaaagttgtcac 52267242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 6693251 - 6693199
Alignment:
Q  16 aaacaatagaggataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| | |||||||||| |  ||||||||||||||||||||||||||    
T  6693251 aaacaatagag-agaaagtaaaaaaataatgagtatgagagaaaaagttgtcac 6693199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 16836118 - 16836167
Alignment:
Q  39 ataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||| ||||||||||||||||||||||||| |||||  ||| |||||||    
T  16836118 ataatgtgagtatgagagaaaaagttgtcacaaaatgattgtacaaatat 16836167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 24806210 - 24806254
Alignment:
Q  27 gataaagtaaaa--ataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||    
T  24806210 gataaagtaaaatgataatatgagtatgagagagaaagttgtcac 24806254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 27687522 - 27687571
Alignment:
Q  39 ataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||| ||||||||||||| ||||||||||| |||||| ||| |||||||    
T  27687522 ataatgtgagtatgagagataaagttgtcacaaaatggttgtacaaatat 27687571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 30745081 - 30745025
Alignment:
Q  16 aaacaatagag-gataaagtaaaa--ataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| ||||||||||||  ||||||||||||||| ||| |||||||||||    
T  30745081 aaacaatagagagataaagtaaaattataatatgagtatgatagagaaagttgtcac 30745025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 30766532 - 30766476
Alignment:
Q  16 aaacaatagag-gataaagtaaaa--ataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| ||||||||||||  ||||||||||||||| ||| |||||||||||    
T  30766532 aaacaatagagagataaagtaaaattataatatgagtatgatagagaaagttgtcac 30766476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 40596057 - 40596106
Alignment:
Q  39 ataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||| ||||||||||||| ||||||||||| |||||| ||| |||||||    
T  40596057 ataatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatat 40596106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 41507197 - 41507246
Alignment:
Q  39 ataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||| ||||||||||||| ||||||||||| |||||| ||| |||||||    
T  41507197 ataatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatat 41507246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 48624967 - 48624892
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtat--gagagaaa--aagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| |||||||  ||||||||  |||||||||| ||||||||||||||||||    
T  48624967 caatagagagataaagtaaaaaataatgtgagtataagagagaaagtaagttgtcacaaaatggatgttcaaatat 48624892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 50884757 - 50884786
Alignment:
Q  39 ataatatgagtatgagagaaaaagttgtca 68  Q
    ||||||||||||||||||||||||||||||    
T  50884757 ataatatgagtatgagagaaaaagttgtca 50884786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 3226040 - 3226092
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| |||||| ||||||||||||||||||    
T  3226040 caatagagagataaagtaaaaaataatgtgagtacgagagaaaaagttgtcac 3226092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 8411695 - 8411747
Alignment:
Q  16 aaacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgt 66  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||| ||||||||    
T  8411695 aaacaatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgt 8411747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 10890026 - 10890078
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  10890026 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcac 10890078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 13489753 - 13489701
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  13489753 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcac 13489701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 50824832 - 50824780
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||| |||||||    
T  50824832 caatagagagataaagtaaaaaataatatgagtatgagagagaaaattgtcac 50824780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 52362573 - 52362521
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  52362573 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcac 52362521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 17683441 - 17683367
Alignment:
Q  16 aaacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  17683441 aaacaatagagagataaagtaaaaagtaatatgagtatgagagataaagttgtcataaaatggatgttcaaatat 17683367  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 4949587 - 4949526
Alignment:
Q  27 gataaagtaaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||||||||| || ||||||||||||| ||||||||||||||||| ||||||||||||    
T  4949587 gataaagtaaaaatgatgtgagtatgagagagaaagttgtcaccaaatgaatgttcaaatat 4949526  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 28657421 - 28657492
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  28657421 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 28657492  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 31657737 - 31657666
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  31657737 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 31657666  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 43769793 - 43769731
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  43769793 gataaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 43769731  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 39312614 - 39312667
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||| ||||||||||||| ||||||||||| |||| |||||||||||||    
T  39312614 aaaaataatgtgagtatgagagagaaagttgtcactaaatagatgttcaaatat 39312667  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 32546347 - 32546386
Alignment:
Q  27 gataaagtaaaaataatatgagtatgagagaaaaagttgt 66  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  32546347 gataaagtaaaaataatgtgagtatgagagaaaaagttgt 32546386  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 9362656 - 9362710
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| ||||||||||||||||||||| ||||||| | |||||||||||    
T  9362656 aaacaatagagagataaagtaaaaataatatgaatatgagatagaaagttgtcac 9362710  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 17683318 - 17683244
Alignment:
Q  16 aaacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||| ||||||||||||| |||| ||||||| ||||| ||||||||||  ||||| ||||||||||||    
T  17683318 aaacaatagagagataaagtaaaaagtaatgtgagtataagagagaaagttgtcataaaatgaatgttcaaatat 17683244  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 26718450 - 26718388
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||||||||| ||| ||||||  ||||||||||||||||||    
T  26718450 gataaagtaaaaagtaatgtgagtatgagagagaaaattgtcataaaatggatgttcaaatat 26718388  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 26731078 - 26731016
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||||||||| ||| ||||||  ||||||||||||||||||    
T  26731078 gataaagtaaaaagtaatgtgagtatgagagagaaaattgtcataaaatggatgttcaaatat 26731016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 33860740 - 33860686
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| |||||||||||||| || ||||||||||||| |||||||||||    
T  33860740 aaacaatagagagataaagtaaaaatgatgtgagtatgagagagaaagttgtcac 33860686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 54802656 - 54802727
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||  | |||||| |||| |||| ||||||||||| ||||||||||||||||||    
T  54802656 caatagagagataaagtaaaatctcatatgaatatgtgagagaaagttgtcacaaaatggatgttcaaatat 54802727  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 55601681 - 55601752
Alignment:
Q  19 caatagag-gataaagtaaaa-ataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| |||| ||||||| ||||| ||||||||||||| ||||||||||  |||| |||||||||||||    
T  55601681 caatagagagatatagtaaaatataatgtgagtatgagagagaaagttgtcataaaatagatgttcaaatat 55601752  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 5386442 - 5386392
Alignment:
Q  38 aataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||| ||||||||||||| ||||||||||  |||||| |||||||||||    
T  5386442 aataatgtgagtatgagagagaaagttgtcaaaaaatggttgttcaaatat 5386392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 14010107 - 14010145
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagtt 64  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  14010107 gataaagtaaaaagtaatatgagtatgagagaaaaagtt 14010145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 39478507 - 39478473
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||||||||||||||| |||||||||||    
T  39478507 aaaaataatatgagtatgagagagaaagttgtcac 39478473  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 40609687 - 40609649
Alignment:
Q  31 aagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  40609687 aagtaaaaataatgtgagtatgagagagaaagttgtcac 40609649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 52846216 - 52846278
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||  |||| |||||| ||||||    
T  52846216 gataaagtaaaaagtaatgtgagtatgagagagaaagttgtcataaaatagatgtttaaatat 52846278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 54036531 - 54036581
Alignment:
Q  38 aataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||| ||||||||||||| ||||||||||| |||||| ||| |||||||    
T  54036531 aataatttgagtatgagagataaagttgtcacaaaatggttgtacaaatat 54036581  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 42667299 - 42667226
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||| |||||||||||||| || ||| |||| |||| ||| || |||| |||| |||||||||||||    
T  42667299 aaacaatagagagataaagtaaaaatgatgtgaatatgtgagagaaaattatcacaaaatagatgttcaaatat 42667226  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 46405954 - 46406003
Alignment:
Q  19 caatagag-gataaagtaaaaat-aatatgagtatgagagaaaaagttgt 66  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  46405954 caatagagagataaagtaaaaattaatgtgagtatgagagaaaaagttgt 46406003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 48326609 - 48326560
Alignment:
Q  39 ataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||| ||||||||||||||||||||||||| || ||| ||| |||||||    
T  48326609 ataatgtgagtatgagagaaaaagttgtcacaaagtggttgtacaaatat 48326560  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 1562536 - 1562568
Alignment:
Q  36 aaaataatatgagtatgagagaaaaagttgtca 68  Q
    |||||||||||||||||||||| ||||||||||    
T  1562536 aaaataatatgagtatgagagagaaagttgtca 1562568  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 21617277 - 21617225
Alignment:
Q  16 aaacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgt 66  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||| ||||||||    
T  21617277 aaacaatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgt 21617225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 28458357 - 28458409
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  28458357 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcac 28458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 30170000 - 30170052
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  30170000 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcac 30170052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 38338902 - 38338954
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  38338902 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcac 38338954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 47965821 - 47965781
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgt 66  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  47965821 gataaagtaaaaagtaatgtgagtatgagagaaaaagttgt 47965781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 51887757 - 51887705
Alignment:
Q  16 aaacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgt 66  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||| ||||||||    
T  51887757 aaacaatagagagataaagtaaaaaataatttgagtatgagagagaaagttgt 51887705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 24645450 - 24645376
Alignment:
Q  16 aaacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  24645450 aaacaatagagagataaagtaaaaagtaatgtgagtatgagagaaaaagttgtcataaaatggatgttcaaatat 24645376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 49761398 - 49761327
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  49761398 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 49761327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 26672492 - 26672420
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||| ||||||||||||||||| |||||||||||| | |||||||||| ||||| ||||||||||||    
T  26672492 aaacaatagagagataaagtaaaaataatgtgagtatgagag-agaagttgtcacaaaatgaatgttcaaatat 26672420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 28430823 - 28430750
Alignment:
Q  16 aaacaatagagga-taaagtaaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||| | ||||||||||||||| ||||||||| ||| |||||||| | |||||||||||||||||||    
T  28430823 aaacaatagagaaataaagtaaaaataatttgagtatgatagagaaagttgttatcaaatggatgttcaaatat 28430750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 51465894 - 51465965
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||||| ||||| |||| |||||||||||||    
T  51465894 caatagagagataaagtaaaaagtaatatgagtatgagagagaaagtggtcacaaaatagatgttcaaatat 51465965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 20080166 - 20080112
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||    
T  20080166 aaacaatagagagataaagtaaaaataatgtgagtatgagagagaaagttgtcac 20080112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 29097531 - 29097601
Alignment:
Q  16 aaacaatagag-gataaagtaaaa-ataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaa 84  Q
    ||||||||||| ||| |||||||| || |||| ||||||||||| ||||||||||| ||||||||||||||    
T  29097531 aaacaatagagagatgaagtaaaatatcatataagtatgagagagaaagttgtcacaaaatggatgttcaa 29097601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 43169755 - 43169805
Alignment:
Q  38 aataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||| ||||||||||||||||||||||||| |||||| ||| |||||||    
T  43169755 aataatgtgagtatgagagaaaaagttgtcacaaaatggttgtacaaatat 43169805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 11234264 - 11234211
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||  |||| |||||||||||||||||||  ||||||||||||||||||    
T  11234264 aaaaataacgtgagaatgagagaaaaagttgtcagtaaatggatgttcaaatat 11234211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 54195412 - 54195359
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||| ||||||| | ||| ||||||||||| ||||||||||||||||||    
T  54195412 aaaaataatgtgagtataaaagagaaagttgtcactaaatggatgttcaaatat 54195359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 1337828 - 1337890
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||||||| | ||| ||||||  ||||||||||||||||||    
T  1337828 gataaagtaaaaaataatgtgagtatgagatagaaaattgtcataaaatggatgttcaaatat 1337890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 3281705 - 3281767
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||| ||||| ||||||||||| ||||  ||||||||||||    
T  3281705 gataaagtaaaaagtaatgtgagtataagagagaaagttgtcacaaaataaatgttcaaatat 3281767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 21005165 - 21005227
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||  ||||||| ||||| ||||||||||| |||| |||||||||||||    
T  21005165 gataaagtaaaaagtaacgtgagtataagagagaaagttgtcacaaaatagatgttcaaatat 21005227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 32421618 - 32421680
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| | |||||||||||||||| |||||| | | ||||| |||||||||||||    
T  32421618 gataaagtaaaaaatgatatgagtatgagagagaaagttattatcaaatagatgttcaaatat 32421680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 88
Target Start/End: Original strand, 37927238 - 37927268
Alignment:
Q  58 aaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||||||||||||||||||||||||||    
T  37927238 aaaagttgtcaccaaatggatgttcaaatat 37927268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 46852122 - 46852164
Alignment:
Q  28 ataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||||||| |||||||||||||||||| |||||||||||    
T  46852122 ataaagtaaaaagtaatatgagtatgagagagaaagttgtcac 46852164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 390900 - 390851
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgt 66  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  390900 caatagagagataaagtaaaaaataatgtgagtatgagagaaaaagttgt 390851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 28700529 - 28700480
Alignment:
Q  39 ataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||| ||||||||||||| ||||||||||  |||||| |||||||||||    
T  28700529 ataatgtgagtatgagagataaagttgtcaaaaaatggttgttcaaatat 28700480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 36412204 - 36412144
Alignment:
Q  28 ataaagtaaa-aataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||||| |||||| ||| ||||||||||||| || |||| ||||||||||||||||||    
T  36412204 ataaagtaaataataatgtgattatgagagaaaaaatt-tcacaaaatggatgttcaaatat 36412144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 39907544 - 39907597
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||| |||||||||||||||||||| |||  ||||  ||||||||||||    
T  39907544 aaaaataatgtgagtatgagagaaaaagttatcattaaataaatgttcaaatat 39907597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 48893415 - 48893362
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||| ||||||||||||||||| ||||||  ||||| ||||| ||||||    
T  48893415 aaaaataatgtgagtatgagagaaaaaattgtcaaaaaatgaatgtttaaatat 48893362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 46019553 - 46019501
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  46019553 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcac 46019501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 49983329 - 49983381
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtc 67  Q
    ||||||||||| |||||||||||||| ||  |||||||||||| |||||||||    
T  49983329 aaacaatagagagataaagtaaaaatgatgagagtatgagagagaaagttgtc 49983381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 50206947 - 50206999
Alignment:
Q  16 aaacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgt 66  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||| ||||||||    
T  50206947 aaacaatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgt 50206999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 51406369 - 51406401
Alignment:
Q  36 aaaataatatgagtatgagagaaaaagttgtca 68  Q
    |||||||||||||||||||||| ||||||||||    
T  51406369 aaaataatatgagtatgagagagaaagttgtca 51406401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 55400090 - 55400038
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  55400090 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcac 55400038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 42678840 - 42678769
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  42678840 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcactaaatggatgttcaaatat 42678769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 42866841 - 42866770
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  42866841 caatagagagataaagtaaaaaataatgtgagtatgagagaaaaagttgtcacaaaatggacgttcaaatat 42866770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 7648484 - 7648430
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  7648484 aaacaatagagagataaagtaaaaatgatatgagtatgagagaaaaagttgtcac 7648430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 36212049 - 36212110
Alignment:
Q  27 gataaagtaaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||| ||||    
T  36212049 gataaagtaaaaataatgtgagtatgaaagataaagttgtcacaaaatggatgttcagatat 36212110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 26277186 - 26277115
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  26277186 caatagagagataaagtaaaaaataatgtgagtataagagagaaagttgtcactaaatggatgttcaaatat 26277115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 2971820 - 2971866
Alignment:
Q  42 atatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  2971820 atatgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 2971866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 3012835 - 3012897
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| | ||||||||||| ||||||||||| ||||||||||||||||||    
T  3012835 gataaagtaaaaaataatgtaagtatgagagagaaagttgtcacaaaatggatgttcaaatat 3012897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 40937044 - 40937113
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaat 86  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||| |||| ||||||||||||||||    
T  40937044 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttatcacaaaatggatgttcaaat 40937113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 42372552 - 42372499
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||| ||||||||||||| ||||||||||| |||| |||||||||||||    
T  42372552 aaaaataatgtgagtatgagagagaaagttgtcactaaatagatgttcaaatat 42372499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 6646886 - 6646843
Alignment:
Q  45 tgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||    
T  6646886 tgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 6646843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 10711815 - 10711744
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||| ||||||| |||| |||||||||||||    
T  10711815 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaaattgtcacaaaatagatgttcaaatat 10711744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 32972915 - 32972958
Alignment:
Q  45 tgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||    
T  32972915 tgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 32972958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 4061939 - 4061981
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagaga 57  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  4061939 aaacaatagagagataaagtaaaaataatatgagtatgagaga 4061981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 12498634 - 12498668
Alignment:
Q  35 aaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||||||||||||||||||||||||||||||    
T  12498634 aaaaataatatgagtatgagagaaaaagttgtcac 12498668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 23352894 - 23352952
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaa 84  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||| |||||| |||||||    
T  23352894 gataaagtaaaaaataatgtgagtatgagagagaaagttgtcacaaaatggctgttcaa 23352952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 30546347 - 30546401
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||    
T  30546347 aaacaatagagagataaagtaaaaataatatgaatatgagagagaaaattgtcac 30546401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 9634425 - 9634468
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||||| |||| |||||||||||||||||||||||||    
T  9634425 gataaagtaaaaagtaatgtgagtatgagagaaaaagttgtcac 9634468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 88
Target Start/End: Complemental strand, 28679354 - 28679324
Alignment:
Q  58 aaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||||||||||||||||||||||||||    
T  28679354 aaaagttgtcaccaaatggatgttcaaatat 28679324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 31578526 - 31578473
Alignment:
Q  19 caatagag-gataaagtaaaa--ataatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||  ||||| |||||||||||||||||||||||||    
T  31578526 caatagagagataaagtaaaagaataatgtgagtatgagagaaaaagttgtcac 31578473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 2427980 - 2428009
Alignment:
Q  39 ataatatgagtatgagagaaaaagttgtca 68  Q
    ||||||||||||||||||||||||||||||    
T  2427980 ataatatgagtatgagagaaaaagttgtca 2428009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 29712069 - 29712012
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaat 74  Q
    |||||||| ||||||||||||| |||| |||||||||||||||| |||||||| ||||    
T  29712069 caatagagagataaagtaaaaagtaatgtgagtatgagagaaaaggttgtcacaaaat 29712012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 34119629 - 34119682
Alignment:
Q  16 aaacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtc 67  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||| |||||||||    
T  34119629 aaacaatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtc 34119682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 2842861 - 2842917
Alignment:
Q  19 caatagag-gataaagtaaaaata-atatgagtatgagagaaaaagttgtcaccaaa 73  Q
    |||||||| |||||| |||||||| || ||||||||||||| |||||||||||||||    
T  2842861 caatagagagataaaataaaaatatatgtgagtatgagagagaaagttgtcaccaaa 2842917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 5054699 - 5054647
Alignment:
Q  19 caatagag-gataaagtaaaa-ataatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| |||||||||| | ||||| |||||||||||||||||||||||||    
T  5054699 caatagagagataaagtaacacataatgtgagtatgagagaaaaagttgtcac 5054647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 6999048 - 6999100
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  6999048 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcac 6999100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 7084756 - 7084792
Alignment:
Q  39 ataatatgagtatgagagaaaaagttgtcaccaaatg 75  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  7084756 ataatatgagtatgagagagaaagttgtcacaaaatg 7084792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 14233699 - 14233751
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||| |||||||    
T  14233699 caatagagagataaagtaaaaagtaatatgagtatgagagagaaatttgtcac 14233751  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 28245819 - 28245767
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  28245819 caatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcac 28245767  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 28041794 - 28041865
Alignment:
Q  19 caatagag-gataaagt-aaaaataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||| |||||||| ||||| ||| |||||||||||||||||||||| |||||||||||||| ||||||    
T  28041794 caatagagagataaagttaaaaacaatgtgagtatgagagaaaaagttgttaccaaatggatgtttaaatat 28041865  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 2689042 - 2689096
Alignment:
Q  16 aaacaatagag-gataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||    
T  2689042 aaacaatagagagataaagtaaaaataatgtgagtatgagagagaaagttgtcac 2689096  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 28748178 - 28748132
Alignment:
Q  42 atatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  28748178 atatgagtatgagagagaaagttgtcacaaaatggatgttcaaatat 28748132  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 5028255 - 5028317
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||| ||||| ||||||||||| ||||||||||| ||||||    
T  5028255 gataaagtaaaaagtaatgtgagtataagagagaaagttgtcacaaaatggatgtttaaatat 5028317  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 14699653 - 14699715
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||||||| | |||||| |||| ||||||||||||||||||    
T  14699653 gataaagtaaaaaataatgtgagtatgagaaagaaagttatcacaaaatggatgttcaaatat 14699715  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 14693241 - 14693303
Alignment:
Q  27 gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||||| |||| ||||||| | ||| |||||| |||| ||||||||||||||||||    
T  14693241 gataaagtaaaaaataatgtgagtatcaaagagaaagttatcacaaaatggatgttcaaatat 14693303  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 23628441 - 23628399
Alignment:
Q  27 gataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||||||||||||||||||||| | ||| |||||||    
T  23628441 gataaagtaaaaataatatgagtatgagatagaaaattgtcac 23628399  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 24842449 - 24842407
Alignment:
Q  27 gataaagtaaaaataatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||    
T  24842449 gataaagtaaaaataatgtgagtatgagagagaaagctgtcac 24842407  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 754418 - 754467
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgt 66  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  754418 caatagagagataaagtaaaaagtaatgtgagtatgagagaaaaagttgt 754467  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 2060636 - 2060685
Alignment:
Q  39 ataatatgagtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||| ||||||||||||||||||||||||  |||||| | |||||||||    
T  2060636 ataatgtgagtatgagagaaaaagttgtcataaaatggttattcaaatat 2060685  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 3610941 - 3610990
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgt 66  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  3610941 caatagagagataaagtaaaaagtaatgtgagtatgagagaaaaagttgt 3610990  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 18141281 - 18141333
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  18141281 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcac 18141333  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 20822848 - 20822900
Alignment:
Q  19 caatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  20822848 caatagagagataaagtaaaaagtaatgtgagtatgagagagaaagttgtcac 20822900  T

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Target: scaffold0100 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 44835 - 44794
Alignment:
Q  47 agtatgagagaaaaagttgtcaccaaatggatgttcaaatat 88  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  44835 agtatgagagagaaagttgtcacaaaatggatgttcaaatat 44794  T

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Target: scaffold0532 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 11058 - 11003
Alignment:
Q  16 aaacaatagag-gataaagtaaaaa-taatatgagtatgagagaaaaagttgtcac 69  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||| |||||||||||    
T  11058 aaacaatagagagataaagtaaaaaataatgtgagtatgagagagaaagttgtcac 11003  T

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