View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6108_low_1 (Length: 1074)

Name: NF6108_low_1
Description: NF6108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6108_low_1
NF6108_low_1
[»] chr8 (11 HSPs)
chr8 (347-588)||(34741975-34742216)
chr8 (172-352)||(34742302-34742482)
chr8 (19-151)||(34743055-34743187)
chr8 (643-737)||(19430733-19430826)
chr8 (643-737)||(19436175-19436268)
chr8 (643-737)||(19566882-19566975)
chr8 (643-737)||(19572324-19572417)
chr8 (643-737)||(31031256-31031349)
chr8 (643-737)||(33616064-33616157)
chr8 (643-737)||(13584870-13584968)
chr8 (242-304)||(34751817-34751879)
[»] chr3 (5 HSPs)
chr3 (643-738)||(13022749-13022843)
chr3 (643-738)||(53120221-53120315)
chr3 (643-737)||(33088616-33088709)
chr3 (643-737)||(38436270-38436363)
chr3 (643-708)||(20811112-20811177)
[»] chr1 (13 HSPs)
chr1 (778-1021)||(11979994-11980237)
chr1 (646-742)||(38734829-38734924)
chr1 (643-738)||(26650427-26650521)
chr1 (643-737)||(13891505-13891598)
chr1 (643-737)||(14582448-14582541)
chr1 (837-1041)||(11953785-11953989)
chr1 (643-737)||(5602170-5602263)
chr1 (650-737)||(39746674-39746760)
chr1 (643-737)||(31289455-31289547)
chr1 (251-304)||(11980881-11980934)
chr1 (643-737)||(12179406-12179494)
chr1 (643-737)||(10106741-10106835)
chr1 (412-493)||(11954460-11954541)
[»] scaffold0132 (2 HSPs)
scaffold0132 (643-738)||(2420-2514)
scaffold0132 (643-738)||(10380-10474)
[»] chr7 (7 HSPs)
chr7 (646-737)||(28291842-28291932)
chr7 (643-738)||(24529090-24529184)
chr7 (643-737)||(9973969-9974062)
chr7 (643-737)||(33227019-33227113)
chr7 (646-737)||(7358037-7358127)
chr7 (678-737)||(10437398-10437456)
chr7 (678-737)||(10451108-10451166)
[»] chr6 (4 HSPs)
chr6 (643-737)||(19478838-19478931)
chr6 (643-706)||(14450626-14450689)
chr6 (643-737)||(10485799-10485890)
chr6 (643-737)||(17289607-17289697)
[»] chr2 (3 HSPs)
chr2 (643-737)||(42915263-42915356)
chr2 (643-737)||(5089778-5089872)
chr2 (644-737)||(39959865-39959952)
[»] chr4 (4 HSPs)
chr4 (643-737)||(10119806-10119899)
chr4 (646-737)||(24490797-24490882)
chr4 (643-737)||(653688-653782)
chr4 (670-739)||(8082771-8082837)
[»] scaffold0011 (2 HSPs)
scaffold0011 (643-737)||(2326-2420)
scaffold0011 (643-737)||(7580-7674)
[»] chr5 (3 HSPs)
chr5 (643-737)||(13581981-13582075)
chr5 (643-683)||(14374824-14374864)
chr5 (643-680)||(7805773-7805810)
[»] scaffold0067 (1 HSPs)
scaffold0067 (643-737)||(33305-33392)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 347 - 588
Target Start/End: Complemental strand, 34742216 - 34741975
Alignment:
Q  347 ctcccatatgcatacatacccacaactacaagcatgatccgcgcattacactggaccaattaattttaagtcagatgatagcaatggcgttgggatcaag 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  34742216 ctcccatatgcatacatacccacaactacaagcatgatccgcgcattacactggaccaatt----ttaagtcagatgatagcaatggcgttgggatcaag 34742121  T
Q  447 tggtgtgcccaaaccccagttgacgttttgcaagaaacaatcccttcatgagctgtattcatgaagtaaagtgtgttgccgatggcaatagggttgaaat 546  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34742120 tggtgtgcccaaaccccagttgacattttggaagaaacaatcccttcatgagctgtattcatgaagtaaagtgtgttgccgatggcaatagggttgaaat 34742021  T
Q  547 tagaaaagcc----tagcagctcaatacttgcaggtatctgtccaa 588  Q
    ||||||||||    ||||||||||||||||||||||||||||||||    
T  34742020 tagaaaagcctagctagcagctcaatacttgcaggtatctgtccaa 34741975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 172 - 352
Target Start/End: Complemental strand, 34742482 - 34742302
Alignment:
Q  172 caaggcattgcagtcagacttggttgaaatgcagtaccatatagcttcttgttacacagttttataccatatggcacaggaaccttcaaccattccctag 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34742482 caaggcattgcagtcagacttggttgaaatgcagtaccatatagcttcttgttacacagttttattccatatggcacaggaaccttcaaccattccctag 34742383  T
Q  272 ttgctatgttgtaagtaaacataagatgcatatcattataacatgatttcaagtataacatgatcaaacctttgtctccca 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34742382 ttgctatgttgtaagtaaacataagatgcatatcattataacatgatttcaagtataacatgatcaaacatttgtctccca 34742302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 34743187 - 34743055
Alignment:
Q  19 tttctttgttgtgcggtgccggtagcaattgtgggaatatgagcgtatcacaagggtgatgtgtttgaggaatgatccttgtaacgctctgcaagggaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34743187 tttctttgttgtgcggtgccggtagcaattgtgggaatatgagcgtatcacaagggtgatgtgtttgaggaatgatccttgtaacgctctgcaagggaaa 34743088  T
Q  119 tgtattaagaagcatatagcaaaaaattaagca 151  Q
    |||||||||||||||||||||||||||||||||    
T  34743087 tgtattaagaagcatatagcaaaaaattaagca 34743055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 19430733 - 19430826
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  19430733 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 19430826  T

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Target: chr8; HSP #5
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 19436175 - 19436268
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  19436175 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 19436268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 19566882 - 19566975
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  19566882 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 19566975  T

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Target: chr8; HSP #7
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 19572324 - 19572417
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  19572324 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 19572417  T

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Target: chr8; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 31031256 - 31031349
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31031256 atgtgagacatttttaagtcacacactcacactagttcttataatgtgtttttcttatccaa-ttttctcattagatttaactagtgttccaaca 31031349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 643 - 737
Target Start/End: Complemental strand, 33616157 - 33616064
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||| |||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||    
T  33616157 atgtgagacatttttaagccacatactcacactagttcttatattgtatttttcttatccaa-ttttctcactagatttaactaatgttccaaca 33616064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 13584870 - 13584968
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtg-----tttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||||     |||||||||||||| |||||||| |||||||||||||||||||||||    
T  13584870 atgtgggacatttttaaatcacacgctcacactaattcttatattgtgttttttttttcttatccaa-ttttctcactagatttaactagtgttccaaca 13584968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 34751879 - 34751817
Alignment:
Q  242 atggcacaggaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcatat 304  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  34751879 atggcacaaaaaccttcagccattccctagttgctatgttgtaagtaaacatatgatacatat 34751817  T

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Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 643 - 738
Target Start/End: Original strand, 13022749 - 13022843
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 738  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  13022749 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaacac 13022843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 643 - 738
Target Start/End: Original strand, 53120221 - 53120315
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 738  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  53120221 atgtgggacatttttaagtcacacactcacactagttcttacatcgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaacac 53120315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 643 - 737
Target Start/End: Complemental strand, 33088709 - 33088616
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  33088709 atgtgggacatttttaagtcacacactcacactagttcttacattatgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 33088616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 643 - 737
Target Start/End: Complemental strand, 38436363 - 38436270
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||| |||||||    
T  38436363 atgtgggacatttttaagtcacacgctcacactagttcttacattgtgtttttcttatccaa-ttttctcactagatttaactggtgctccaaca 38436270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 643 - 708
Target Start/End: Original strand, 20811112 - 20811177
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttt 708  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20811112 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaatttt 20811177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 2e-39; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 778 - 1021
Target Start/End: Complemental strand, 11980237 - 11979994
Alignment:
Q  778 ccatcttttcataaaagggtcatagatagctccatatttgttctctccaaaggttgtataaaaccatggattttcttgtgagacttgatcaaaatgctga 877  Q
    ||||||||||||| |||||||||| || ||| |||| |  |  |||||||| ||||||||||| ||||||||||| |||||||||||| || ||  ||||    
T  11980237 ccatcttttcatataagggtcatacatggcttcataatcataatctccaaaagttgtataaaagcatggattttcctgtgagacttgagcacaaaactga 11980138  T
Q  878 taaaacctttgagaggttaacaaattattccattgacgacatacaatgcgtaagcgaaaaattatggcaattggaagtcgtgcaagcacaaactcaaata 977  Q
     |||| || || ||| ||| ||| |||||||||||  ||||||||  ||| ||||||| |||| || |||| |||||||||||||| |||  ||||||||    
T  11980137 gaaaaactctgtgagcttatcaagttattccattgctgacatacagcgcggaagcgaataattgtgacaatgggaagtcgtgcaagaacattctcaaata 11980038  T
Q  978 gatcttcaggaaatgttccccaaatttctggttccataaattca 1021  Q
    |||||||||||||| || ||||||||| ||||| ||||| ||||    
T  11980037 gatcttcaggaaatttttcccaaatttgtggtttcataacttca 11979994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 646 - 742
Target Start/End: Original strand, 38734829 - 38734924
Alignment:
Q  646 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacactggt 742  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  38734829 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaacaatggt 38734924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 643 - 738
Target Start/End: Complemental strand, 26650521 - 26650427
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 738  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  26650521 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaacac 26650427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 13891505 - 13891598
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  13891505 atgtgggacatttttaagtcacacacttacactagttcttatattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 13891598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 14582448 - 14582541
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  14582448 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagatttaactagtgttccaaca 14582541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 837 - 1041
Target Start/End: Complemental strand, 11953989 - 11953785
Alignment:
Q  837 aaaaccatggattttcttgtgagacttgatcaaaatgctgataaaacctttgagaggttaacaaattattccattgacgacatacaatgcgtaagcgaaa 936  Q
    |||||||||||||| |||||||||||| |  | | |||||| |||| ||||||||||||| |||||||||||||||  | |||||| | || || |  |     
T  11953989 aaaaccatggatttacttgtgagactttagaacattgctgagaaaaactttgagaggttatcaaattattccattgctggcatacagtacggaaacatat 11953890  T
Q  937 aattatggcaattggaagtcgtgcaagcacaaactcaaatagatcttcaggaaatgttccccaaatttctggttccataaattcaacaatacatgacatt 1036  Q
    |||| |||| || ||||||||||||||||||| |||||||||||||||||| ||  || ||||||||||||||| ||||| ||||   |||||||||| |    
T  11953889 aattttggccatgggaagtcgtgcaagcacaacctcaaatagatcttcagggaacttttcccaaatttctggtttcataacttcagtcatacatgacact 11953790  T
Q  1037 ctaga 1041  Q
    |||||    
T  11953789 ctaga 11953785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 643 - 737
Target Start/End: Complemental strand, 5602263 - 5602170
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||| ||||||||||||||||    
T  5602263 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactaaattcaactagtgttccaaca 5602170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 650 - 737
Target Start/End: Complemental strand, 39746760 - 39746674
Alignment:
Q  650 acatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  39746760 acatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 39746674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 31289455 - 31289547
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||| ||||||||||||||||    
T  31289455 atgtgggacatttttaagtcacacactcacactagttcttacattgtg-ttttcttatccaa-ttttctcactagattcaactagtgttccaaca 31289547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 11980934 - 11980881
Alignment:
Q  251 gaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcatat 304  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| ||| |||||    
T  11980934 gaaccgtcaaccattccctagttgctatgttgtaaataatcatacgatacatat 11980881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 12179406 - 12179494
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||| ||| |||||||||||||||||    ||||||||||| |||||||||||| |||||||||||| | | |||| |||||||| |||||||||    
T  12179406 atgtaggatatttttaagtcacacac----actagttcttacattgtgtttttc-tatccaattttt-ttactagaattaactagggttccaaca 12179494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 10106741 - 10106835
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgt-gtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||||||||||||||||||||||  ||||||||||| ||| | ||  || |||| |  ||| |||||||| |||||| ||||||||||||||||    
T  10106741 atgtgggacatttttaagtcacacaaccacactagttcctatgtagtaattattctcaatcaa-ttttctcactagattgaactagtgttccaaca 10106835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 412 - 493
Target Start/End: Complemental strand, 11954541 - 11954460
Alignment:
Q  412 ttaagtcagatgatagcaatggcgttgggatcaagtggtgtgcccaaaccccagttgacgttttgcaagaaacaatcccttc 493  Q
    |||||||||||||  |||| |||  | |||||||||| |||| |||||||||||||||||| |  ||||||  |||||||||    
T  11954541 ttaagtcagatgaatgcaacggcacttggatcaagtgttgtgtccaaaccccagttgacgtatcacaagaactaatcccttc 11954460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 80; Significance: 6e-37; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 643 - 738
Target Start/End: Complemental strand, 2514 - 2420
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 738  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  2514 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaacac 2420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 643 - 738
Target Start/End: Complemental strand, 10474 - 10380
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 738  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  10474 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaacac 10380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 646 - 737
Target Start/End: Complemental strand, 28291932 - 28291842
Alignment:
Q  646 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  28291932 tgggacatttttaagtcacacgctcacactagttcttatattgtgtttttcttatccaa-ttttctaattagatttaactagtgttccaaca 28291842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 643 - 738
Target Start/End: Original strand, 24529090 - 24529184
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacac 738  Q
    |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  24529090 atgtaggatatttttaagtcacacactcacactagttcttatattatgtttttcttatccaa-ttttctcactagatttaactagtgttccaacac 24529184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 9973969 - 9974062
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  9973969 atgtgggacatttttaagtcacacactcacattagttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 9974062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 33227019 - 33227113
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgttttt-cttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  33227019 atgtggaacatttttaagtcacacactcacactagttcttacattgtgtttttccttatccaa-ttttctcactagatttaactagtgttccaaca 33227113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 646 - 737
Target Start/End: Original strand, 7358037 - 7358127
Alignment:
Q  646 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||||  ||||| ||||||||||||||||    
T  7358037 tgggacatttttaagtcacacgctcacactagttcttgcattgtgtttttcttatccaa-ttttctcaaaagattcaactagtgttccaaca 7358127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 678 - 737
Target Start/End: Original strand, 10437398 - 10437456
Alignment:
Q  678 ttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  10437398 ttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 10437456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 678 - 737
Target Start/End: Original strand, 10451108 - 10451166
Alignment:
Q  678 ttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  10451108 ttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 10451166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 5e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 19478838 - 19478931
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  19478838 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 19478931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 643 - 706
Target Start/End: Complemental strand, 14450689 - 14450626
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatt 706  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14450689 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaatt 14450626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 10485799 - 10485890
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||| ||||||||||||| |||||  ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  10485799 atgtggaacatttttaagtctcacac--acactagttcttacattgtgtttttct-atccaatttttctcactagatttaactagtattccaaca 10485890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 643 - 737
Target Start/End: Complemental strand, 17289697 - 17289607
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  17289697 atgtgggacatttttaagtcacacac--acactagttcttacattgtgtttttc-tatccaa-ttttctcactagattcaactagtgttccaaca 17289607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 5e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 42915263 - 42915356
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  42915263 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcactagattcaactagtgttccaaca 42915356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 5089778 - 5089872
Alignment:
Q  643 atgtgggacattttt-aagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||||||| |||||||| || ||| |||||||||| |||||    
T  5089778 atgtgggacattttttaagtcccgcactcacactagttcttacattgtgtttttcttatccaa-ttttctcactaaattcaactagtgtttcaaca 5089872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 644 - 737
Target Start/End: Original strand, 39959865 - 39959952
Alignment:
Q  644 tgtgggacattttt-aagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||||||||||| |||||||||||    | ||||||||||||||| |||||| ||||||| |||  ||| |||||||||||| ||||||||||    
T  39959865 tgtgggacattttttaagtcacacac----aatagttcttatattgtatttttc-tatccaacttt--tcactagatttaactactgttccaaca 39959952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 643 - 737
Target Start/End: Complemental strand, 10119899 - 10119806
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||| ||||||||||||||||    
T  10119899 atgtgggacatttttaagtcacacactcacactagttcttacattgtgtttttcttatccaa-ttttctcacgagattcaactagtgttccaaca 10119806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 646 - 737
Target Start/End: Original strand, 24490797 - 24490882
Alignment:
Q  646 tgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||||||||||||| ||||||    ||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  24490797 tgggacatttttaagttacacac----actagttcttacattgtgtttttct-atccaatttt-ctcactagatttaactagtgttccaaca 24490882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 653688 - 653782
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtg-tttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||||| |  ||||||||||||||| | ||| || |||| |||||| |||||||| |||||| ||||||||||||||||    
T  653688 atgtgggacatttttaagtcacataaccacactagttcttatgtagtgattattctcatccaa-ttttctcactagattaaactagtgttccaaca 653782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 670 - 739
Target Start/End: Complemental strand, 8082837 - 8082771
Alignment:
Q  670 cacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaacact 739  Q
    |||||||||||||| || |||||||||| |||||| ||||| |  |||| ||||||||||||||||||||    
T  8082837 cacactagttcttacatagtgtttttct-atccaacttttcac--tagaattaactagtgttccaacact 8082771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 60; Significance: 5e-25; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 2326 - 2420
Alignment:
Q  643 atgtgggacatttt-taagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| |||||||| ||| || ||||||||||||||||    
T  2326 atgtgggacattttttaagtcacacactcacactagttctttcattgtgtttttcttatccaa-ttttctcactaggttcaactagtgttccaaca 2420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 7580 - 7674
Alignment:
Q  643 atgtgggacatttt-taagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| |||||||| ||| || ||||||||||||||||    
T  7580 atgtgggacattttttaagtcacacactcacactagttctttcattgtgtttttcttatccaa-ttttctcactaggttcaactagtgttccaaca 7674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 643 - 737
Target Start/End: Complemental strand, 13582075 - 13581981
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtg-tttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    ||||||||||||||||||||||| |  ||||||||||||||| | ||| || |||| |||||| |||||||| |||||| ||||||||||||||||    
T  13582075 atgtgggacatttttaagtcacataaccacactagttcttatgtagtgattattctcatccaa-ttttctcactagattgaactagtgttccaaca 13581981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 643 - 683
Target Start/End: Original strand, 14374824 - 14374864
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttctta 683  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  14374824 atgtgggacatttttaagtcacacaaccacactagttctta 14374864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 643 - 680
Target Start/End: Original strand, 7805773 - 7805810
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttc 680  Q
    |||||||||||||||||||||||||  |||||||||||    
T  7805773 atgtgggacatttttaagtcacacaaccacactagttc 7805810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 643 - 737
Target Start/End: Complemental strand, 33392 - 33305
Alignment:
Q  643 atgtgggacatttttaagtcacacactcacactagttcttatattgtgtttttcttatccaatttttctcattagatttaactagtgttccaaca 737  Q
    |||||||||||||||||||||||    |||||||||||||| |||||||||||| |||||||||||  ||| |||| ||||||||| ||||||||    
T  33392 atgtgggacatttttaagtcaca----cacactagttcttacattgtgtttttc-tatccaatttt--tcactagaattaactagtattccaaca 33305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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