View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6108_low_3 (Length: 502)

Name: NF6108_low_3
Description: NF6108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6108_low_3
NF6108_low_3
[»] chr7 (1 HSPs)
chr7 (20-489)||(2284047-2284516)
[»] chr1 (3 HSPs)
chr1 (27-483)||(18217901-18218360)
chr1 (24-343)||(4598952-4599271)
chr1 (315-483)||(21306662-21306830)
[»] chr2 (2 HSPs)
chr2 (24-483)||(24987799-24988261)
chr2 (25-483)||(25566762-25567222)
[»] chr3 (1 HSPs)
chr3 (201-481)||(16922159-16922442)
[»] scaffold0059 (1 HSPs)
scaffold0059 (25-292)||(34710-34980)
[»] chr4 (1 HSPs)
chr4 (24-297)||(11885067-11885343)
[»] chr6 (2 HSPs)
chr6 (24-184)||(20246719-20246882)
chr6 (24-184)||(22140703-22140866)
[»] chr5 (1 HSPs)
chr5 (210-303)||(22803746-22803839)


Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 20 - 489
Target Start/End: Original strand, 2284047 - 2284516
Alignment:
Q  20 agcggcaccaccgtcgaccaacactttgttaacaccaatctcatccactttattttggatgaacaaaggcttgaggtgactcttcatcgaagcatcaggt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2284047 agcggcaccaccgtcgaccaacactttgttaacaccaatctcatccactttattttggatgaacaaaggcttgaggtgactcttcatcaaagcatcaggt 2284146  T
Q  120 tgttcaaatatggatttccgattatcttcagagccattattcacaaaatagcacatgggtttgtactcccccgcgtatttgggatcgaactcttcctcta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  2284147 tgttcaaatatggatttccgattatcttcagagccattattcacaaaatagcacatgggtttgtactcccttgtgtatttgggatcgaactcttcctcta 2284246  T
Q  220 aatcatcaacttccgatatcatatcatacttagctggtaaaatggaaaccaaattgtatatgacatagaagtctggttcagaatttgtaaaccctgatcc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2284247 aatcatcaacttccgatatcatatcatacttagctggtaaaatggaaaccaaattctatatgacatagaagtctggttcagaatttgtaaaccctgatcc 2284346  T
Q  320 taactcattatccccattaggatcttcttcatcaggaaaagacaacctcttttttgctggtcttcttttttattctatcattctctgatcaccctttgga 419  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2284347 taactcattatccccattaggatcttcttcagcaggaaaagacaacctcttttttgctggtcttcttttttattctatcattctctgatcaccctttgga 2284446  T
Q  420 tcaacagtcccatcttcaaggcttgtaggaactcctttcttagacctctggaaccttctccattatgttc 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2284447 tcaacagtcccatcttcaaggcttgtaggaactcctttcttagacctctggaaccttctccgttatgttc 2284516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 27 - 483
Target Start/End: Complemental strand, 18218360 - 18217901
Alignment:
Q  27 ccaccgtcgaccaacactttgttaacaccaatctcatccactttattttggatgaacaaaggcttgaggtgactcttcatcgaagcatcaggttgttcaa 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||  ||||| ||| ||||||||||| ||||| | |||||||    
T  18218360 ccaccgtcgaccaacactttgttaacaccaatctcatccactttggcttggatgaacaaagttttgagatgattcttcatcgaatcatcaagctgttcaa 18218261  T
Q  127 atatggatttccgattatcttcagagccattattcacaaaatagcacatgggtttgtactcccccgcgtatttgggatcgaactcttcctctaaatcatc 226  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||  || |||||||||||||||||||||| |||||||    
T  18218260 atatggctttccgattatcttcagagccattattcacaaaatagcacatggctttatattcctccatgtctttgggatcgaactcttcctctgaatcatc 18218161  T
Q  227 aacttccgatatcatatcatacttagctggtaaaatggaaaccaaattgtatatgacatagaagtctggttcagaatttgtaaaccctgatcctaactca 326  Q
    |||||| |||||||||||| | | ||| ||||||||||||||||||||| ||||||||| |||||||||||| |||| || | | |||||||||||||||    
T  18218160 aacttcggatatcatatcaaattcagcgggtaaaatggaaaccaaattgcatatgacattgaagtctggttctgaatctgaatatcctgatcctaactca 18218061  T
Q  327 ttatccccattaggatcttcttc-at--caggaaaagacaacctcttttttgctggtcttcttttttattctatcattctctgatcaccctttggatcaa 423  Q
    | |||  |||||||||| ||||| ||   ||| | | ||||||||| |||| |||||||||||||   ||| | ||||  ||||| ||||||||| |  |    
T  18218060 tcatcttcattaggatcctcttcgattagagggagatacaacctctcttttactggtcttcttttgggttcgaccatttcctgattaccctttgggttga 18217961  T
Q  424 cagtcccatcttcaaggcttgtaggaactcctttcttagacctctggaaccttctccatt 483  Q
    ||    |||||||||||||||||| ||   ||||||| ||||||||| |||| |||||||    
T  18217960 caacttcatcttcaaggcttgtagaaatgtctttcttggacctctggtacctcctccatt 18217901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 24 - 343
Target Start/End: Original strand, 4598952 - 4599271
Alignment:
Q  24 gcaccaccgtcgaccaacactttgttaacaccaatctcatccactttattttggatgaacaaaggcttgaggtgactcttcatcgaagcatcaggttgtt 123  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||   ||||||||||||||| ||||| ||| || |||||||| ||||| | ||||    
T  4598952 gcaccaccgtcgaccaacactttgttaacaccgatctcattcactttggcttggatgaacaaaggtttgagatgattcctcatcgaatcatcacgctgtt 4599051  T
Q  124 caaatatggatttccgattatcttcagagccattattcacaaaatagcacatgggtttgtactcccccgcgtatttgggatcgaactcttcctctaaatc 223  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||      ||||||||||||||||||||| ||||    
T  4599052 caaatatggctttccgattatcttcatagccattattcacaaaatagcacatgggtctgtattcctccattcccttgggatcgaactcttcctctgaatc 4599151  T
Q  224 atcaacttccgatatcatatcatacttagctggtaaaatggaaaccaaattgtatatgacatagaagtctggttcagaatttgtaaaccctgatcctaac 323  Q
    ||||||||| |||||||| ||||| |  |||||||||| | ||||||||||| ||||||||| |||||||| ||  || | |||||| ||||||||||||    
T  4599152 atcaacttcagatatcatgtcatattcggctggtaaaacgaaaaccaaattgcatatgacatcgaagtctgattttgactctgtaaatcctgatcctaac 4599251  T
Q  324 tcattatccccattaggatc 343  Q
    |||| |||  ||||||||||    
T  4599252 tcatcatcttcattaggatc 4599271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 315 - 483
Target Start/End: Complemental strand, 21306830 - 21306662
Alignment:
Q  315 gatcctaactcattatccccattaggatcttcttcatcaggaaaagacaacctcttttttgctggtcttcttttttattctatcattctctgatcaccct 414  Q
    |||||| ||||||||||||||||||||||||||||| ||| || |||||| |||| ||||| ||||||||||||| |||| | |||||||||||||||||    
T  21306830 gatcctgactcattatccccattaggatcttcttcaacagcaagagacaaactctcttttgatggtcttctttttgattcgaccattctctgatcaccct 21306731  T
Q  415 ttggatcaacagtcccatcttcaaggcttgtaggaactcctttcttagacctctggaaccttctccatt 483  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||| ||| || | ||||||||||||    
T  21306730 ttgggtcaacagtctcatcttcaaggcttgtagaaactcctttcttaaaccgctagtaccttctccatt 21306662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 24 - 483
Target Start/End: Complemental strand, 24988261 - 24987799
Alignment:
Q  24 gcaccaccgtcgaccaacactttgttaacaccaatctcatccactttattttggatgaacaaaggcttgaggtgactcttcatcgaagcatcaggttgtt 123  Q
    |||||||| ||| ||||||||||||| | |||||| |||||||||||   ||| ||||||||||| || |  ||||||||||| ||| ||||||| ||||    
T  24988261 gcaccaccatcgcccaacactttgttgataccaatatcatccactttggcttgaatgaacaaaggtttaatatgactcttcattgaatcatcaggctgtt 24988162  T
Q  124 caaatatggatttccgattatcttcagagccattattcacaaaatagcacatgggtttgtactcccccgcgtatttgggatcgaactcttcctctaaatc 223  Q
    ||||||||| |||| |||||||||||||  ||| |||||  || ||||||||||||||||| ||  ||  ||  ||||||||||||| || |||| ||||    
T  24988161 caaatatggctttctgattatcttcagatacatcattcaataagtagcacatgggtttgtattcttccatgtccttgggatcgaacttttactctgaatc 24988062  T
Q  224 atcaacttccgatatcatatcatacttagctggtaaaatggaaaccaaattgtatatgacatagaagtctggttcagaatttgtaaaccctgatcctaac 323  Q
    ||| ||||| |||||||||||||| | ||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |||||| | ||||||||||    
T  24988061 atcgacttcagatatcatatcatattcagctggtaaaatggaaaccaaattgcatatgacatcgaagtctggttctgaatctgtaaatcttgatcctaac 24987962  T
Q  324 tcattatccccattaggatcttcttcatc---aggaaaagacaacctcttttttgctggtcttcttttttattctatcattctctgatcaccctttggat 420  Q
    |||| |||  |||||||||| || ||  |   ||||| ||||||||||| ||||  |||||||||| || |||| | ||||||||||||||||||||| |    
T  24987961 tcatcatcttcattaggatcctcctcgactaaaggaagagacaacctctcttttattggtcttcttcttgattcgaccattctctgatcaccctttgggt 24987862  T
Q  421 caacagtcccatcttcaaggcttgtaggaactcctttcttagacctctggaaccttctccatt 483  Q
    |||||||| |||||||||||||||||| ||   ||| |||||| |||||| ||||||||||||    
T  24987861 caacagtctcatcttcaaggcttgtagaaatgtcttccttagatctctggtaccttctccatt 24987799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 25 - 483
Target Start/End: Complemental strand, 25567222 - 25566762
Alignment:
Q  25 caccaccgtcgaccaacactttgttaacaccaatctcatccactttattttggatgaacaaaggcttgaggtgactcttcatcgaagcatcaggttgttc 124  Q
    ||||||||||||||||||||||||||| |  || ||||||||||||   ||||||||||||||| ||||| ||||||||||||||| ||||  | |||||    
T  25567222 caccaccgtcgaccaacactttgttaataataacctcatccactttggattggatgaacaaaggtttgagatgactcttcatcgaatcatctagctgttc 25567123  T
Q  125 aaatatggatttccgattatcttcagagccattattcacaaaatagcacatgggtttgtactcccccgcgtatttgggatcgaactcttcctctaaatca 224  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||  |  ||| |  ||||||||||| | |  | ||    
T  25567122 aaatatggctttacgattatcttcagagccatcattcacaaaatagcacatgggttggtactctcccatgccttt-gcttcgaactcttcatttgcaaca 25567024  T
Q  225 tcaacttccgatatcatatcatacttagctggtaaaatggaaaccaaattgtatatgacatagaagtctggttcagaatttgtaaaccctgatcctaact 324  Q
    ||||| || |||||||||||||| |  |||||||| ||||||||||||||  |||||||||  ||||||||||| |||| |||||| | |||||||||||    
T  25567023 tcaacctcagatatcatatcatattcggctggtaagatggaaaccaaattacatatgacatctaagtctggttctgaatctgtaaatcttgatcctaact 25566924  T
Q  325 cattatccccattaggatcttcttc-at--caggaaaagacaacctcttttttgctggtcttcttttttattctatcattctctgatcaccctttggatc 421  Q
    |||||||| |||||||||||||||| ||   ||||| | | ||||||| ||||| ||||||||||||| || | | | ||||||||||||| ||||| ||    
T  25566923 cattatcctcattaggatcttcttcgattaaaggaagatataacctctcttttgttggtcttctttttgatacgaccgttctctgatcaccatttgggtc 25566824  T
Q  422 aacagtcccatcttcaaggcttgtaggaactcctttcttagacctctggaaccttctccatt 483  Q
    ||||||  |||||||||||||||||| ||   ||||||| |||||| || |||| |||||||    
T  25566823 aacagtttcatcttcaaggcttgtagaaatgtctttcttggacctccggtacctcctccatt 25566762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 201 - 481
Target Start/End: Original strand, 16922159 - 16922442
Alignment:
Q  201 ggatcgaactcttcctctaaatcatcaacttccgatatcatatcatacttagctggtaaaatggaaaccaaattgtatatgacatagaagtctggttcag 300  Q
    ||||||||||||| |||||||||||||||||| ||||||| |||||| || |||||||||||||||||||||||| |||||||||  ||||||||||       
T  16922159 ggatcgaactctttctctaaatcatcaacttcagatatcaaatcatatttggctggtaaaatggaaaccaaattgcatatgacatcaaagtctggttttc 16922258  T
Q  301 aatttgtaaaccctgatcctaactcattatccccattaggatcttctt---catcaggaaaagacaacctcttttttgctggtcttcttttttattctat 397  Q
    ||| |||||| || |||||||||||||||||| |||||||||| ||||   |   ||||| ||| ||||||| ||||| ||||||||| ||  |||| |     
T  16922259 aatctgtaaatcccgatcctaactcattatcctcattaggatcatctttgactataggaagagataacctctcttttgttggtcttctattggattcgac 16922358  T
Q  398 cattctctgatcaccctttggatcaacagtcccatcttcaaggcttgtaggaactcctttcttagacctctggaaccttctcca 481  Q
    |||||||||||| ||||| || ||||||||  | |||| ||||||||||  ||  |||||||| ||||||||| |||| |||||    
T  16922359 cattctctgatctcccttcgggtcaacagtttcctctttaaggcttgtaaaaatgcctttcttggacctctggtacctcctcca 16922442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 34710 - 34980
Alignment:
Q  25 caccaccgtcgaccaacactttgttaacaccaatctcatccactttattttggatgaacaaaggcttgaggtgactcttcatcgaagcatcaggttgttc 124  Q
    ||||||||||||||||||||||||| | |||||||||||| | |||   ||||||| ||||| | || || ||| ||||||||||| ||| ||| | |||    
T  34710 caccaccgtcgaccaacactttgttgataccaatctcatctagtttgccttggatggacaaacgtttaagatgattcttcatcgaaccattaggcttttc 34809  T
Q  125 aaatatggatttccgattatcttcagagccattattc---acaaaatagcacatgggtttgtactcccccgcgtatttgggatcgaactcttcctctaaa 221  Q
     |||||||||||||| | |||| || ||||||||||    ||||| ||||||||||| ||||| ||| ||  ||  ||||||||||||||||||||| ||    
T  34810 gaatatggatttccgttaatctacaaagccattatttgttacaaagtagcacatggggttgtattcctccatgtccttgggatcgaactcttcctctgaa 34909  T
Q  222 tcatcaacttccgatatcatatcatacttagctggtaaaatggaaaccaaattgtatatgacatagaagtc 292  Q
    || |||||||| || | ||||||||| | |||||| ||||||||||||| |||| ||||||| | ||||||    
T  34910 tcctcaacttcagacaccatatcatattcagctggcaaaatggaaaccacattgcatatgacgtcgaagtc 34980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 24 - 297
Target Start/End: Complemental strand, 11885343 - 11885067
Alignment:
Q  24 gcaccaccgtcgaccaacactttgttaacaccaatctcatccactttattttggatgaacaaaggcttgaggtgactcttcatcgaagcatcaggttgtt 123  Q
    |||| ||||||||||||||||||||| |  ||||||||||| |||||   ||||||||||||||| || || ||| ||||||||||| ||||||| | ||    
T  11885343 gcacaaccgtcgaccaacactttgttgatgccaatctcatctactttggcttggatgaacaaaggtttaagatgattcttcatcgaatcatcaggatttt 11885244  T
Q  124 caaatatggatttccgattatcttcagagccattat---tcacaaaatagcacatgggtttgtactcccccgcgtatttgggatcgaactcttcctctaa 220  Q
    | ||||||| ||||| || |||||||| ||||||||   | ||||| || || ||||||||||| ||| ||   |  ||||||||||||||||||||| |    
T  11885243 cgaatatggctttccaataatcttcagggccattatttgttacaaagtaccatatgggtttgtattcctccatatccttgggatcgaactcttcctctga 11885144  T
Q  221 atcatcaacttccgatatcatatcatacttagctggtaaaatggaaaccaaattgtatatgacatagaagtctggtt 297  Q
    ||| |||||||| || | ||||||||| | |||||| ||||||||||| | |||| ||||||| | |||||| ||||    
T  11885143 atcctcaacttcagacaccatatcatattcagctggcaaaatggaaacaacattgcatatgacgtcgaagtccggtt 11885067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 20246719 - 20246882
Alignment:
Q  24 gcaccaccgtcgaccaacactttgttaacaccaatctcatccactttattttggatgaacaaaggcttgaggtgactcttcatcgaagcatcaggttgtt 123  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||||   ||||||||||||||  || || ||| ||||||||||| ||||| ||| ||    
T  20246719 gcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagttttt 20246818  T
Q  124 caaatatggatttccgattatcttcagagccattat---tcacaaaatagcacatgggtttgta 184  Q
    | |||||||||||  ||| || || |||||||| ||   | |||||||||||||||||||||||    
T  20246819 cgaatatggatttttgatcatttttagagccatcatttgttacaaaatagcacatgggtttgta 20246882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 22140703 - 22140866
Alignment:
Q  24 gcaccaccgtcgaccaacactttgttaacaccaatctcatccactttattttggatgaacaaaggcttgaggtgactcttcatcgaagcatcaggttgtt 123  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||||   ||||||||||||||  || || ||| ||||||||||| ||||| ||| ||    
T  22140703 gcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaacaaagttttaagatgattcttcatcgaatcatcaagttttt 22140802  T
Q  124 caaatatggatttccgattatcttcagagccattat---tcacaaaatagcacatgggtttgta 184  Q
    | |||||||||||  ||| || || |||||||| ||   | |||||||||||||||||||||||    
T  22140803 cgaatatggatttttgatcatttttagagccatcatttgttacaaaatagcacatgggtttgta 22140866  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 303
Target Start/End: Original strand, 22803746 - 22803839
Alignment:
Q  210 tcttcctctaaatcatcaacttccgatatcatatcatacttagctggtaaaatggaaaccaaattgtatatgacatagaagtctggttcagaat 303  Q
    ||||||||| ||||||| ||||| |||| ||||||||| | |||||| ||||| || |||| |||| ||||||  | |||||||||||| ||||    
T  22803746 tcttcctctgaatcatcgacttcagataccatatcatattaagctggcaaaattgagaccacattgcatatgaagtcgaagtctggttctgaat 22803839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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