View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6109_high_11 (Length: 225)
Name: NF6109_high_11
Description: NF6109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6109_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 9692161 - 9692363
Alignment:
| Q |
1 |
ttaaattaattacatatatattctagctagtaattgcattggtgacaaacgattaaaataagagattgcaagacttactgaaaaattatcacatttgtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9692161 |
ttaaattaattacatatatattctagctagtaattgcattggtgacaaacgattaaaataagagattgcaagacttactgaaaaattatcacatttgtat |
9692260 |
T |
|
| Q |
101 |
atggttgtatatgtgacccttggattctctcttaaaatgctttcaggtttgaagaactgcaaatctttacttagtccaacatcttctggcttcatgttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9692261 |
atggttgtatatgtgacccttggattctctctgaaaatgctttcaggtttgaagaactgcaaatctttacttagtccaacatcttctggcttcatgttgt |
9692360 |
T |
|
| Q |
201 |
ctg |
203 |
Q |
| |
|
||| |
|
|
| T |
9692361 |
ctg |
9692363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 33528301 - 33528176
Alignment:
| Q |
73 |
acttactgaaaaattatcacatttgtatatggttgtatatgtgacccttggattctctcttaaaatgctttcaggtttgaagaactgcaaatctttactt |
172 |
Q |
| |
|
|||||| || ||||| ||||||||||| | || || |||||||||||| |||||||| | | ||| || |||| |||||||| |||| |||| ||||| |
|
|
| T |
33528301 |
acttacagagaaattgtcacatttgtagactgtggtgtatgtgaccctttgattctctttaataatatttccaggcttgaagaattgcagatctctactt |
33528202 |
T |
|
| Q |
173 |
agtccaacatcttctggcttcatgtt |
198 |
Q |
| |
|
||||||||||| |||||||||||||| |
|
|
| T |
33528201 |
agtccaacatcctctggcttcatgtt |
33528176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University