View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6109_low_1 (Length: 609)
Name: NF6109_low_1
Description: NF6109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6109_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 475
Target Start/End: Original strand, 26833606 - 26834066
Alignment:
| Q |
10 |
acatcatcaacgacatgcctaggcaaagaaacactgcaactctcagcaatggcacgatcaatggctctctgatttgtctccaacgaaactcgagttgtaa |
109 |
Q |
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| T |
26833606 |
acatcatcaacgacatgcctaggcaaacaaacactgcaactctcagcaatggcacgatcaatggctctctgatttgtctccaaagaaactcgtgttgtaa |
26833705 |
T |
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| Q |
110 |
accaagtccattccttgctccttgaaaagcatacannnnnnnacttcaaatgnnnnnnngaataaatttaaccaactttacttaaagaaaaggagaaaaa |
209 |
Q |
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| T |
26833706 |
accaagtccattccttgctccttgaaaagcatacatttttttacttcaaatgtttttttgaataaatttaaccaactttacttaaagaaaaggagaaaaa |
26833805 |
T |
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| Q |
210 |
cttgtttttgtttccaggg-tcatgcagaaaagaaactgtggaagaggtagaaaaattaacaaaacgttgatatgcttgaagatctaagcatgttatggt |
308 |
Q |
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| T |
26833806 |
cttgtttttgtttccaggggtcatgcagaaaagaaactgtgaaagaggtagaaaaattaacaaaacgttgatatgcttgaagatctaagcatgttatggt |
26833905 |
T |
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| Q |
309 |
tccttaatgaaaaagaaaagagagacagaacagaacaatgacaatgcaaagcaggtaaatggttggaaaaatgaaagnnnnnnnnnnnnnnnnnnntgct |
408 |
Q |
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| T |
26833906 |
tccttaatgaaaaagaaaagagagacagaacagaacaatgacaatgcaaagcaggtaaatggttggaaaattgaaag------gagagagagagagtgct |
26833999 |
T |
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| Q |
409 |
tgcgggtttcagtttctgtaagagctatggcactgtgattgtgagaaataagaatgctctgtttttt |
475 |
Q |
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| T |
26834000 |
tgcgggtttcagtttctgtaagagctatggcactgtgattgtgagaaataagaatgctctgtttttt |
26834066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 500 - 557
Target Start/End: Original strand, 26834085 - 26834142
Alignment:
| Q |
500 |
attaaagcgttgtttgctttttatagtggatttagctgaactatcactgcctcataaa |
557 |
Q |
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| T |
26834085 |
attaaagcgttgtttgctttttatagtggatttagttgaactatcactgcctcataaa |
26834142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 26786819 - 26786891
Alignment:
| Q |
12 |
atcatcaacgacatgcctaggcaaagaaacactgcaactctcagcaatggcacgatcaatggctctctgattt |
84 |
Q |
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| T |
26786819 |
atcatcaatgacatgcttaggcagataaacactgcagctctcagcattggcacgatcaaaggttctcttattt |
26786891 |
T |
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