View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6109_low_2 (Length: 473)
Name: NF6109_low_2
Description: NF6109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6109_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 173 - 448
Target Start/End: Original strand, 30697989 - 30698265
Alignment:
| Q |
173 |
atctgcagattttccctaacaaaatggaagatcaaagtagtgagtttatcaccattttaagggtatgtgttggcacattttatgtcctaaatgtgatgtc |
272 |
Q |
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| T |
30697989 |
atctgcagattttccctaacaaaatggaagatcaaagtagtgattttatcaccattgtaagggtatgtgttggcacattttatgtcctaaatgtgatgtc |
30698088 |
T |
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| Q |
273 |
tttgtctaaatactgtctatttgcattaaggtacttgtcatgttc-ttttttgttcaatggatactactactagtactcactctttgagctcaaattacg |
371 |
Q |
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| T |
30698089 |
tttgtctaaatactgtctatttgcattaaggtacttgtcatgttctttttttgttcaatggatactactactagtactcactctttgagctcaaattacg |
30698188 |
T |
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| Q |
372 |
aataaaattttgtttcatgtgaaaataaaaagaaagatcacaaaacctaaacacgctaagcagattaagcgatgatg |
448 |
Q |
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| T |
30698189 |
aataaaattttgtttcatgtgaaaataaaaagaaagatcgcaaaacctaaacacgctaagcggattaagcgatgatg |
30698265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 30697761 - 30697934
Alignment:
| Q |
1 |
agaagaaagcaagtgtgtgatcaattgtgtgagagtttcttgcaaatgatagtgtttaatttatcatttcttgtaactcttaag----tgagagtactta |
96 |
Q |
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| T |
30697761 |
agaagaaagcaagtgtgtgatcaattgtgtgagagtttcttgcaaatgatagtgtttaatttatcatttcttgtaactcttaagtaagtgagagtactta |
30697860 |
T |
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| Q |
97 |
aatttgtagagcgatacgcaattcagtttagttgctcaagatatacaagaagtgtctatccacataaatttttg |
170 |
Q |
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| T |
30697861 |
aatttgtagagcgatacgcaattcagtttagttgctcaagatatacaagaagtgtctaaccacataaatttttg |
30697934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 30688559 - 30688721
Alignment:
| Q |
1 |
agaagaaagcaagtgtgtgatcaattgtgtgagagtttcttgcaaatgatagtgtttaatttatcatttcttgtaactcttaagtgagagtacttaaatt |
100 |
Q |
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| T |
30688559 |
agaagaaagcaagtgtgtgatcaattgtgtgagagtttcttgtaa-tgatagtgttt----tatcatttcttgtaactcttaagtgagagtactaaaatt |
30688653 |
T |
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| Q |
101 |
tgtagagcgatacgcaattcagtttagttgctcaagatatacaagaagtgtctatccacataaatttt |
168 |
Q |
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| T |
30688654 |
tgtagagtgatacgcaattcaggttagttgctcaagatatgcaagaagtgtctaagcacataaatttt |
30688721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 228 - 350
Target Start/End: Original strand, 30689153 - 30689274
Alignment:
| Q |
228 |
tttaagggtatgtgttggcacattttatgtcctaaatgtgatgtctttgtctaaatactgtctatttgcattaaggtacttgtcatgttcttttttgttc |
327 |
Q |
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| T |
30689153 |
tttaagggtatgtgttggcacattgtatgtcctaaatgt-atgtctttgtcttaatactgtctatttgcattaaggtacttgtcatgtttttatatgttc |
30689251 |
T |
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| Q |
328 |
aatggatactactactagtactc |
350 |
Q |
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| T |
30689252 |
aatgaatactactactcgtactc |
30689274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 30688768 - 30688833
Alignment:
| Q |
167 |
tttggtatctgcagattttccctaacaaaatggaagatcaaagtagtgagtttatcaccattttaa |
232 |
Q |
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| T |
30688768 |
tttggtatctgcagattttccccaacaaaatggaagatcaaagtagtgagtttaacaccattttaa |
30688833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 30718563 - 30718611
Alignment:
| Q |
236 |
tatgtgttggcacattttatgtcctaaatgtgatgtctttgtctaaata |
284 |
Q |
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| T |
30718563 |
tatgtattggcacattgtatgtcctaaatgttatgtctttgtcttaata |
30718611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 30671281 - 30671332
Alignment:
| Q |
242 |
ttggcacattttatgtcctaaatgtgatgtctttgtctaaatactgtctatt |
293 |
Q |
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| T |
30671281 |
ttggcacattgaatgtcctaaatgctatgtctttgtcttaatactgtctatt |
30671332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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