View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6109_low_5 (Length: 336)
Name: NF6109_low_5
Description: NF6109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6109_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 6319522 - 6319651
Alignment:
| Q |
18 |
aacaacctcaataaatgaaactcaaatagaatctagggtttctcacttccaagtcaagtgagcgattcccttctctcaccatcaccacctatcgcctctg |
117 |
Q |
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| T |
6319522 |
aacaacctcaataaatgaaactcaaatagaatctagggtttctcacttccaagtcaagtgagcgattcccttctctcaccatcaccacctatcgcctctg |
6319621 |
T |
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| Q |
118 |
cctcacttccacgtggttagttttacactg |
147 |
Q |
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| T |
6319622 |
cctcacttccacgtggttagttttacactg |
6319651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 218 - 326
Target Start/End: Original strand, 6319729 - 6319837
Alignment:
| Q |
218 |
ggatcttcaagcatattgagattcatgagtagcacttcaagcgaacactatggtgatcacaaaactcacatattgagagtcatgaatagcgctttaagcg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6319729 |
ggatcttcaagcatattgagattcatgagtagcacttcaagcgaacactatggtgatcacaaaactcacatattgagagtcatgaatagcgctttaagcg |
6319828 |
T |
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| Q |
318 |
atgatgatg |
326 |
Q |
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| T |
6319829 |
aagatgatg |
6319837 |
T |
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