View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6109_low_8 (Length: 253)

Name: NF6109_low_8
Description: NF6109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6109_low_8
NF6109_low_8
[»] chr7 (14 HSPs)
chr7 (2-238)||(4630631-4630867)
chr7 (63-230)||(4712238-4712405)
chr7 (70-230)||(4697353-4697513)
chr7 (63-230)||(4783998-4784165)
chr7 (25-230)||(4666659-4666867)
chr7 (151-230)||(4672529-4672608)
chr7 (153-230)||(4653375-4653452)
chr7 (63-230)||(4816427-4816594)
chr7 (71-188)||(4636636-4636753)
chr7 (146-230)||(4846178-4846262)
chr7 (151-230)||(4643524-4643603)
chr7 (146-209)||(4647381-4647444)
chr7 (162-230)||(4863786-4863854)
chr7 (151-188)||(4661651-4661688)
[»] chr4 (1 HSPs)
chr4 (70-230)||(18925905-18926065)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 4630631 - 4630867
Alignment:
Q  2 ctgggtagataattcttgatgccggggagatagaccaatgaattttgaaatttgccctgcaagattagttttatcacttattttgaaaatctcaattcca 101  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4630631 ctgggttgaaaattcttgatgccggggagatagaccaatgaattttgaaatttgccctgcaagattagttttatcacttattttgaaaatctcaattcca 4630730  T
Q  102 ttcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagattaactctttcaatttgagagcttccttcttgag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4630731 ttcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagattaactctttcaatttgagagcttccttcttgag 4630830  T
Q  202 agtacataggcacaacataatccttatgagtaggaac 238  Q
    |||||||| ||||||||||||||||||||||||||||    
T  4630831 agtacataagcacaacataatccttatgagtaggaac 4630867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 4712405 - 4712238
Alignment:
Q  63 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattg 162  Q
    |||||| ||||||||||||||||||||||||||||||||||||  | ||||||||| ||  ||||||  ||| |||||||| ||||| ||||||| ||||    
T  4712405 agattatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaattg 4712306  T
Q  163 aaagattaactctttcaatttgagagcttccttcttgagagtacataggcacaacataatccttatga 230  Q
    |||| |||||||||||||||| ||||||||| | ||||||||||||   |||| ||||||||||||||    
T  4712305 aaaggttaactctttcaatttcagagcttccattttgagagtacattttcacagcataatccttatga 4712238  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 4697513 - 4697353
Alignment:
Q  70 ttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagatt 169  Q
    |||||||| ||||||| |||||||| || |||||||    ||||||||  ||| |||||   |||  | ||||||||||| | |||||||||||||||||    
T  4697513 ttttatcatttattttcaaaatctcgatgccattcaatgtgacatcaccgtatcttgtgaagatacgtcctggtgctcgttgtagcttgattgaaagatt 4697414  T
Q  170 aactctttcaatttgagagcttccttcttgagagtacataggcacaacataatccttatga 230  Q
    || |||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||    
T  4697413 aagtctttcaatttgagagcttccttcttgagagtgcatagacacagcataatctttatga 4697353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 4784165 - 4783998
Alignment:
Q  63 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattg 162  Q
    |||||| |||||||||||||||| ||||||||||||||||||| |  ||||||||||||||  ||  | |||| || ||||  |||| | |||||||| |    
T  4784165 agattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgtaggcataggttttggtaatcgttgtagcttgatcg 4784066  T
Q  163 aaagattaactctttcaatttgagagcttccttcttgagagtacataggcacaacataatccttatga 230  Q
    ||||||||||| |||||||||||||||||||  |||||||   ||||| |||  ||||||||||||||    
T  4784065 aaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatga 4783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 4666659 - 4666867
Alignment:
Q  25 ggggagatagaccaatgaattttgaaatttgccctgcaagatt---agttttatcacttattttgaaaatctcaattccattcagcaggacatcacgata 121  Q
    ||||||||||| ||||| ||||||| ||| | ||||| |||||   | |||| ||||||||||| |||||||| |||||||| || ||||||||||  ||    
T  4666659 ggggagatagaacaatggattttgatattggtcctgcgagattgttatttttgtcacttatttttaaaatctcgattccattaagaaggacatcactgta 4666758  T
Q  122 tattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacataggcacaacataa 221  Q
    | ||||    | |||||||||| ||||| ||||||| |||||||||||||||||||||||||||  ||| ||| ||||||| | ||||| ||   |||||    
T  4666759 ttttgtaaagacagtttctggtactcgttgaagcttaattgaaagattaactctttcaatttgacggctccctccttgagaatccatagtcaaggcataa 4666858  T
Q  222 tccttatga 230  Q
    |||||||||    
T  4666859 tccttatga 4666867  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 4672529 - 4672608
Alignment:
Q  151 gaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacataggcacaacataatccttatga 230  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  4672529 gaagcttaatagaaagattaactctttcaatttgagagcttccttcttgagagtacatagtgacagcataatccttatga 4672608  T

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Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 4653375 - 4653452
Alignment:
Q  153 agcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacataggcacaacataatccttatga 230  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||    
T  4653375 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcatagtcacaacataatccttatga 4653452  T

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Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 4816594 - 4816427
Alignment:
Q  63 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattg 162  Q
    |||||| |||||||||||||||| ||||||||||||||||||| |  ||||||||||||||  |   | |||| || ||||  |||  | |||||||| |    
T  4816594 agattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgaaggcataggttttggtaatcgatgtagcttgatcg 4816495  T
Q  163 aaagattaactctttcaatttgagagcttccttcttgagagtacataggcacaacataatccttatga 230  Q
    ||||||||||| |||||||||||||||||||  | |||||   ||||| |||  ||||||||||||||    
T  4816494 aaagattaactttttcaatttgagagcttccgccatgagaacccatagtcacggcataatccttatga 4816427  T

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Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 4636636 - 4636753
Alignment:
Q  71 tttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagatta 170  Q
    ||||||||| |||||||||||||| |||||||| || |  ||||||||||||| |||  | || | || ||||  |||| |||||||||||||||||| |    
T  4636636 tttatcactaattttgaaaatctcgattccattaagaataacatcacgatatactgtaggcatgggttgtggtaatcgttgaagcttgattgaaagataa 4636735  T
Q  171 actctttcaatttgagag 188  Q
    ||||||||||||||||||    
T  4636736 actctttcaatttgagag 4636753  T

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Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 4846262 - 4846178
Alignment:
Q  146 tcgtcgaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacataggcacaacataatccttatga 230  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||   |||| ||||||||||||||    
T  4846262 tcgttgaagcttgattgaaagattaactctttcaatttcagagcttccattttgagagtagattttcacagcataatccttatga 4846178  T

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Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 4643524 - 4643603
Alignment:
Q  151 gaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacataggcacaacataatccttatga 230  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||| ||   ||||||||||||||    
T  4643524 gaagcttgattgaaagattagctctttcaagttgagagcttccttcttgatagtccatagacattgcataatccttatga 4643603  T

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Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 4647381 - 4647444
Alignment:
Q  146 tcgtcgaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacata 209  Q
    |||| |||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  4647381 tcgttgaagcttgattgaaagattaactctttcaatttgattccttcctccttgagagtacata 4647444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 4863786 - 4863854
Alignment:
Q  162 gaaagattaactctttcaatttgagagcttccttcttgagagtacataggcacaacataatccttatga 230  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  |||| ||||  |||||||||||||    
T  4863786 gaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatga 4863854  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 4661651 - 4661688
Alignment:
Q  151 gaagcttgattgaaagattaactctttcaatttgagag 188  Q
    |||||||||||||||||| |||||||||||||||||||    
T  4661651 gaagcttgattgaaagatcaactctttcaatttgagag 4661688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 18926065 - 18925905
Alignment:
Q  70 ttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagatt 169  Q
    |||| ||||||||||| |||||||| || |||||||    ||||| ||| ||| ||| ||  ||| |||||||||||||| | ||||| |||||||||||    
T  18926065 ttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacggtattttgagtagatattttctggtgctcgttgtagctttattgaaagatt 18925966  T
Q  170 aactctttcaatttgagagcttccttcttgagagtacataggcacaacataatccttatga 230  Q
    |||||||| |||||| |||||||||||| |||||||||||| |||||||||||||||||||    
T  18925965 aactcttttaatttgcgagcttccttctcgagagtacatagtcacaacataatccttatga 18925905  T

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