View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6110_high_3 (Length: 249)

Name: NF6110_high_3
Description: NF6110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6110_high_3
NF6110_high_3
[»] chr7 (19 HSPs)
chr7 (1-227)||(10494873-10495099)
chr7 (1-227)||(13333867-13334093)
chr7 (1-226)||(8653887-8654118)
chr7 (76-227)||(8666937-8667088)
chr7 (79-216)||(8671608-8671745)
chr7 (141-227)||(8658946-8659032)
chr7 (141-227)||(1301044-1301130)
chr7 (141-227)||(8545216-8545302)
chr7 (91-227)||(6789048-6789181)
chr7 (90-194)||(8558918-8559019)
chr7 (72-134)||(29582430-29582492)
chr7 (141-197)||(8586235-8586291)
chr7 (141-197)||(8616261-8616317)
chr7 (45-113)||(17259726-17259794)
chr7 (45-113)||(17267429-17267497)
chr7 (150-217)||(8575918-8575985)
chr7 (160-226)||(8537638-8537704)
chr7 (69-113)||(8569825-8569869)
chr7 (141-181)||(8609500-8609540)
[»] chr4 (3 HSPs)
chr4 (76-227)||(9336390-9336541)
chr4 (1-227)||(30774695-30774921)
chr4 (76-125)||(35131977-35132026)
[»] chr1 (4 HSPs)
chr1 (141-217)||(4679066-4679142)
chr1 (147-227)||(34467287-34467367)
chr1 (143-227)||(15594619-15594703)
chr1 (135-227)||(52549445-52549537)
[»] chr2 (7 HSPs)
chr2 (141-227)||(16658016-16658102)
chr2 (141-227)||(43624995-43625081)
chr2 (141-227)||(16662491-16662577)
chr2 (76-125)||(12259179-12259228)
chr2 (78-122)||(14702931-14702975)
chr2 (78-125)||(7541749-7541796)
chr2 (171-227)||(14703021-14703077)
[»] chr5 (1 HSPs)
chr5 (141-227)||(28219501-28219587)
[»] chr8 (1 HSPs)
chr8 (76-118)||(12528025-12528067)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10495099 - 10494873
Alignment:
Q  1 ctcttgctctctcaccctcatatacgttaaaagagacaccacaattatctccagctgtataaaatattttagtcatcttgacagggatggaagtgttcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10495099 ctcttgctctctcaccctcatatacgttaaaagagacaccacaattatctccagctgtataaaatattttagtcatcttgacagggatggaagtgttcct 10495000  T
Q  101 aggaatcaccacatccatgatatcttcatttgttacttcaataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10494999 aggaatcaccacatccatgatatcttcatttgttacttcaataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagcct 10494900  T
Q  201 tcactcaaaatagcagcctgaacagct 227  Q
    |||||||||||||||||||||||||||    
T  10494899 tcactcaaaatagcagcctgaacagct 10494873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13334093 - 13333867
Alignment:
Q  1 ctcttgctctctcaccctcatatacgttaaaagagacaccacaattatctccagctgtataaaatatt---ttagtcatcttgacagggatggaagtgtt 97  Q
    ||||||||||||||||||||||||| | || |||||||| |||||||||| ||||||||||| ||  |   |||||| ||||||||||||||||||||||    
T  13334093 ctcttgctctctcaccctcatatacatcaatagagacacaacaattatcttcagctgtataatatcctcctttagtcttcttgacagggatggaagtgtt 13333994  T
Q  98 cctaggaatcaccacatccatgatatcttcatttgttacttcaataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaag 197  Q
    |||||||||||| |||| |||||||| ||||| |   |||  |||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||    
T  13333993 cctaggaatcacaacattcatgatatgttcatat---actgaaataccaagtgataatgggataacatctcgtagcaccaagttcgggacagtcttaaag 13333897  T
Q  198 ccttcactcaaaatagcagcctgaacagct 227  Q
    ||||||||||||||||||||||||||||||    
T  13333896 ccttcactcaaaatagcagcctgaacagct 13333867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 8653887 - 8654118
Alignment:
Q  1 ctcttgctctctcaccctcatatacgttaaaagagacaccacaattatctccagctgtataaaatattttagtcatcttgacagggatggaagtgttcct 100  Q
    |||||| ||||||||||||||| ||  ||| |||| ||||||||||||||  ||||||| || ||  ||||||  | |||||||||||||||||||||||    
T  8653887 ctcttggtctctcaccctcataaacaataatagaggcaccacaattatctatagctgtacaatatcctttagtatttttgacagggatggaagtgttcct 8653986  T
Q  101 aggaatcaccacatccatgatatcttc---atttgttactt---caataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattctta 194  Q
    ||||||||||||||||||||||| |||   || |||| ||    | |||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  8653987 aggaatcaccacatccatgatattttcccaatatgttgctgttgcgataccaagtgacaatggggtaacatcacgtagcaccaagttggggacattctta 8654086  T
Q  195 aagccttcactcaaaatagcagcctgaacagc 226  Q
    ||| ||||||||||||||||||||||||||||    
T  8654087 aagtcttcactcaaaatagcagcctgaacagc 8654118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 8666937 - 8667088
Alignment:
Q  76 tcttgacagggatggaagtgttcctaggaatcaccacatccatgatatcttcatttgttacttcaataccaagtgacaatggggtaacatctcgtagcac 175  Q
    |||||||||| ||||||||||| |||||||||||||||  |||||||| |||| |  ||||   ||||||||||||||| ||||| ||||||||||||||    
T  8666937 tcttgacaggtatggaagtgtttctaggaatcaccacactcatgatatgttcaatacttacagaaataccaagtgacaaaggggtcacatctcgtagcac 8667036  T
Q  176 caagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  8667037 caagttggggacattcttacagccttcactcaaaatagcagcctgaacagct 8667088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 79 - 216
Target Start/End: Complemental strand, 8671745 - 8671608
Alignment:
Q  79 tgacagggatggaagtgttcctaggaatcaccacatccatgatatcttcatttgttacttcaataccaagtgacaatggggtaacatctcgtagcaccaa 178  Q
    ||||||| ||||||||||| || ||||||||||||  |||||||| |||| |  || |  ||||||||||||||||||| ||||||||||||||||||||    
T  8671745 tgacaggtatggaagtgtttcttggaatcaccacactcatgatatgttcaatccttgcagcaataccaagtgacaatggcgtaacatctcgtagcaccaa 8671646  T
Q  179 gttcgggacattcttaaagccttcactcaaaatagcag 216  Q
    ||| |||||||||||||||||||  |||||||||||||    
T  8671645 gttggggacattcttaaagcctttgctcaaaatagcag 8671608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 8658946 - 8659032
Alignment:
Q  141 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||  || |||| |||||| |||| ||||    
T  8658946 ataccaagtgacaatggggtaacatcttgcagcaccaagtttgggacattcttaaagcctttgcttaaaacagcagcttgaagagct 8659032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 1301044 - 1301130
Alignment:
Q  141 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||||||||| || ||||  || ||||||||||| |||| ||||    
T  1301044 ataccaagtgacaatggggtaacatcttgcagcaccaagtttgggacattcttgaatcctttgcttaaaatagcagcttgaatagct 1301130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 8545216 - 8545302
Alignment:
Q  141 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||  | |||||||||  | ||||||||| ||||||    
T  8545216 ataccaagtgacaaaggggtaacatctcgtagcaccatgtttgggacattcttattgtcttcactcagcaaagcagcctggacagct 8545302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 6789048 - 6789181
Alignment:
Q  91 aagtgttcctaggaatcaccacatccatgatatcttcatttgttacttcaataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacatt 190  Q
    |||||||||||||||||||||||  ||||| || | |   | ||||| |  ||||||| ||||| || ||||||||| | ||||||||||| || ||| |    
T  6789048 aagtgttcctaggaatcaccacactcatgacatttcc---tattactgccttaccaagagacaacggtgtaacatcttgcagcaccaagtttggaacact 6789144  T
Q  191 cttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    |||| ||||||| ||||| | ||||||||| ||||||    
T  6789145 cttagagccttcgctcaacaaagcagcctggacagct 6789181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 8558918 - 8559019
Alignment:
Q  90 gaagtgttcctaggaatcaccacatccatgatatcttcatttgttacttcaataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacat 189  Q
    ||||| ||||||||||||||||||  ||| |||||| |    || |||||||||||||| ||||| |||||||||||||  ||||||| ||| || ||||    
T  8558918 gaagtattcctaggaatcaccacactcataatatctccg---gtcacttcaataccaagggacaaaggggtaacatctctcagcaccatgtttggaacat 8559014  T
Q  190 tctta 194  Q
    |||||    
T  8559015 tctta 8559019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 29582492 - 29582430
Alignment:
Q  72 gtcatcttgacagggatggaagtgttcctaggaatcaccacatccatgatatcttcatttgtt 134  Q
    ||||||||| |||| |||| ||||||||||||||||||||||  |||||||||| | ||||||    
T  29582492 gtcatcttggcaggaatgggagtgttcctaggaatcaccacactcatgatatctccttttgtt 29582430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 8586291 - 8586235
Alignment:
Q  141 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaag 197  Q
    |||||||||||||  |||||||||||||| ||||||||||| || || |||||||||    
T  8586291 ataccaagtgacagaggggtaacatctcgcagcaccaagtttggaactttcttaaag 8586235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 8616261 - 8616317
Alignment:
Q  141 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaag 197  Q
    |||||||||||||  |||||||||||||| ||| ||||||| || ||||||||||||    
T  8616261 ataccaagtgacagaggggtaacatctcgcagcgccaagtttggaacattcttaaag 8616317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 17259726 - 17259794
Alignment:
Q  45 ttatctccagctgtataaaatattttagtcatcttgacagggatggaagtgttcctaggaatcaccaca 113  Q
    |||||| ||||||||  | || |||| || ||||||||||| || ||||||||||||||||||||||||    
T  17259726 ttatctgcagctgtaatatatttttttgtaatcttgacaggaattgaagtgttcctaggaatcaccaca 17259794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 17267429 - 17267497
Alignment:
Q  45 ttatctccagctgtataaaatattttagtcatcttgacagggatggaagtgttcctaggaatcaccaca 113  Q
    |||||| ||||||||  | || |||| || ||||||||||| || ||||||||||||||||||||||||    
T  17267429 ttatctgcagctgtaatatatttttttgtaatcttgacaggaattgaagtgttcctaggaatcaccaca 17267497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 8575918 - 8575985
Alignment:
Q  150 gacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagc 217  Q
    ||||| || ||||||||||||| ||||||||| || |||||||||  |||||||||||| | ||||||    
T  8575918 gacaacggtgtaacatctcgtaacaccaagtttggaacattcttactgccttcactcaacaaagcagc 8575985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 8537638 - 8537704
Alignment:
Q  160 taacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagc 226  Q
    |||||||||| |||||||||||||| ||| |||||| |||| | ||||| | ||||||||| |||||    
T  8537638 taacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagc 8537704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 8569825 - 8569869
Alignment:
Q  69 ttagtcatcttgacagggatggaagtgttcctaggaatcaccaca 113  Q
    |||||| | |||||||| |||||||||||||| ||||||||||||    
T  8569825 ttagtccttttgacaggaatggaagtgttccttggaatcaccaca 8569869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 8609500 - 8609540
Alignment:
Q  141 ataccaagtgacaatggggtaacatctcgtagcaccaagtt 181  Q
    |||||||||||||| || ||||||||||| |||||||||||    
T  8609500 ataccaagtgacaaaggtgtaacatctcgcagcaccaagtt 8609540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 9336541 - 9336390
Alignment:
Q  76 tcttgacagggatggaagtgttcctaggaatcaccacatccatgatatcttcatttgttacttcaataccaagtgacaatggggtaacatctcgtagcac 175  Q
    |||||||||| ||||||||||| |||||||||||||||  |||||||| ||| ||   |  | | |||||||||||||||||||||||||||||||||||    
T  9336541 tcttgacaggtatggaagtgtttctaggaatcaccacactcatgatattttccttatatgttgcgataccaagtgacaatggggtaacatctcgtagcac 9336442  T
Q  176 caagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    |||||| ||  ||||||||||||||||||||||||||||||| |||||||||    
T  9336441 caagttgggcgcattcttaaagccttcactcaaaatagcagcttgaacagct 9336390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 30774695 - 30774921
Alignment:
Q  1 ctcttgctctctcaccctcatatacgttaaaagagacaccacaat---tatctccagctgtataaaatattttagtcatcttgacagggatggaagtgtt 97  Q
    |||||||||||||||||||||| || |||| ||||||||  ||||   |||| | ||| |||  | ||  ||| |||||||| ||||| |  ||||| ||    
T  30774695 ctcttgctctctcaccctcataaacattaatagagacacggcaatggttatcgctagcagtaccatatccttttgtcatcttcacaggtagagaagtatt 30774794  T
Q  98 cctaggaatcaccacatccatgatatcttcatttgttacttcaataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaag 197  Q
    ||||||||| |||||||||||| | |||| |||    |||  ||||||||||||||| ||||| |||||||| |||||||| || ||| ||||||||| |    
T  30774795 cctaggaattaccacatccatggtgtcttgattc---actgaaataccaagtgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatg 30774891  T
Q  198 ccttcactcaaaatagcagcctgaacagct 227  Q
    ||||||||||| | ||||||||| ||||||    
T  30774892 ccttcactcaatagagcagcctggacagct 30774921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 35131977 - 35132026
Alignment:
Q  76 tcttgacagggatggaagtgttcctaggaatcaccacatccatgatatct 125  Q
    |||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  35131977 tcttgacaggaatgcaagtgttcctaggaatcaccacattcatgatatct 35132026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 4679142 - 4679066
Alignment:
Q  141 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagc 217  Q
    ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||||||||||||||    
T  4679142 ataccaagtgacaatggggtaacatctcgcagcacaaaattcgggacattcttaaaaccttcgctcaaaatagcagc 4679066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 34467367 - 34467287
Alignment:
Q  147 agtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    ||||||||||| ||||||||||| ||||||||||| || ||||| |||||||||| |||||| | |||||| || ||||||    
T  34467367 agtgacaatggtgtaacatctcgcagcaccaagtttggaacattgttaaagcctttactcaacaaagcagcttgcacagct 34467287  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 15594619 - 15594703
Alignment:
Q  143 accaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    |||||| ||||| || | ||||||| ||| ||||||||| || ||||| ||||| ||||||||||| | ||||||||| ||||||    
T  15594619 accaagagacaaaggtgcaacatcttgtatcaccaagtttggaacatttttaaaaccttcactcaacaaagcagcctggacagct 15594703  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 52549537 - 52549445
Alignment:
Q  135 acttcaataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    ||||||||  |||| ||||| || ||||||||  | |||||||| || || ||||||| || |||||||||||| |  |||||||||||||||    
T  52549537 acttcaatgacaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagct 52549445  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 16658102 - 16658016
Alignment:
Q  141 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    |||||||| |||||||||||||||||||  | |||||| |  ||||||||||||||||||||||||||||||||||| |||||||||    
T  16658102 ataccaagcgacaatggggtaacatctctcaacaccaaatctgggacattcttaaagccttcactcaaaatagcagcttgaacagct 16658016  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 43624995 - 43625081
Alignment:
Q  141 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    |||||||||||||| |||||||||||||| |||||||| || || |||||||||| ||||| |||||||||||||||||| ||||||    
T  43624995 ataccaagtgacaaaggggtaacatctcgcagcaccaattttggaacattcttaatgcctttactcaaaatagcagcctggacagct 43625081  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 16662577 - 16662491
Alignment:
Q  141 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    ||||||||||||||||||||||| ||||| ||||||||||| || |||| ||||| |||||||||||| | |||||| || ||||||    
T  16662577 ataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagct 16662491  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 12259228 - 12259179
Alignment:
Q  76 tcttgacagggatggaagtgttcctaggaatcaccacatccatgatatct 125  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  12259228 tcttgacaggaatgcaagtgttcctaggaatcaccacatccatgatatct 12259179  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 14702931 - 14702975
Alignment:
Q  78 ttgacagggatggaagtgttcctaggaatcaccacatccatgata 122  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||    
T  14702931 ttgacaggaatgcaagtgttcctaggaatcaccacatccatgata 14702975  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 7541749 - 7541796
Alignment:
Q  78 ttgacagggatggaagtgttcctaggaatcaccacatccatgatatct 125  Q
    |||||||| ||| ||||||||| |||||||||||||||||| ||||||    
T  7541749 ttgacaggaatgcaagtgttccgaggaatcaccacatccattatatct 7541796  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 14703021 - 14703077
Alignment:
Q  171 agcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    |||||||| ||||| |||||||| | | |||||||||| | ||||||||||||||||    
T  14703021 agcaccaacttcggaacattcttgacgtcttcactcaacaaagcagcctgaacagct 14703077  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 28219501 - 28219587
Alignment:
Q  141 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagct 227  Q
    |||||||| ||||| || ||||||||| | |||||||| ||||| || || ||||||||||||||||| | ||||||||| ||||||    
T  28219501 ataccaagagacaaaggtgtaacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagct 28219587  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 12528025 - 12528067
Alignment:
Q  76 tcttgacagggatggaagtgttcctaggaatcaccacatccat 118  Q
    |||||||||||||| ||||||||||||||||||  ||||||||    
T  12528025 tcttgacagggatgcaagtgttcctaggaatcataacatccat 12528067  T

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