View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6110_low_1 (Length: 374)
Name: NF6110_low_1
Description: NF6110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6110_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 350
Target Start/End: Complemental strand, 39629182 - 39628845
Alignment:
| Q |
12 |
atgaatatatcaatttagttgttgatgatgagaagaattcatctcatcataaacaattaaattaaatnnnnnnnnnttacatcaatatatcaaaggaaat |
111 |
Q |
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| T |
39629182 |
atgaatatatcaatttagttgttgatgatgagaagaattcatctcatcataaacaattaaattaaataaaaaaaa-ttacatcaatatatcaaaggaaat |
39629084 |
T |
|
| Q |
112 |
aaatgaaggcaaaattcaacatcatagaaatgacaacagaaatggacgaccctgcatatatgttaatcctgattatagtgaggacaactttggattatag |
211 |
Q |
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| T |
39629083 |
aaatgaaggcaaaattcaacatcatagaaatgacaacagaaatggacgaccctgcatatatgttaatcctgattatagtgaggacaactttggattatag |
39628984 |
T |
|
| Q |
212 |
tgatgagaatcccttaaccctgtctctcggagggtttgtttcatttcttccatatcctcttcttgatcagatttggattgagcttggattaaaacaacaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39628983 |
tgatgagaatcccttaaccctgtctctcggagggtttgtttcatgtcttccatctcctcttcttgatcagatttggattgagcttggattaaaacaacaa |
39628884 |
T |
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| Q |
312 |
tcattgccaaaaatataactatcgattatttgtctattc |
350 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
39628883 |
tcattgccaaaaatataactatcgattatttgtgtattc |
39628845 |
T |
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