View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6110_low_2 (Length: 256)
Name: NF6110_low_2
Description: NF6110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6110_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 2597737 - 2597505
Alignment:
| Q |
9 |
caaaggatgttaattatggtgacttccattttctttgttaattgcataaaacatatgtttatgttttccattgcaaaaatatcacactattataagtttt |
108 |
Q |
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| T |
2597737 |
caaaggatgttaattatggtgacttccattttctttgttaattgcataaaacatatgtttatgttttccattgcaaaaatatcacattattataagtttt |
2597638 |
T |
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| Q |
109 |
caaatatttataataatagtagaatacttttcaatgttttctatactaaaatctgaaaaataataccttgtgcattgtgattctttctataacattttat |
208 |
Q |
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| T |
2597637 |
caaatatttataaaaatattagaatacttttcaatgttttctatactaaaatctgcaaaataataccttgtgcattgtgattctttctataacattttct |
2597538 |
T |
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| Q |
209 |
ttattccaattaatgacataggtaagatctttg |
241 |
Q |
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| T |
2597537 |
ttattccaattaatgacatacgtaagatctttg |
2597505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 2570183 - 2570139
Alignment:
| Q |
24 |
atggtgacttccattttctttgttaattgcataaaacatatgttt |
68 |
Q |
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| T |
2570183 |
atggtggcttccattttctttgttaattgcatgaaacatatgttt |
2570139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 2570133 - 2570080
Alignment:
| Q |
115 |
tttataataatagtagaatacttttcaatgttttctatactaaaatctgaaaaa |
168 |
Q |
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| T |
2570133 |
tttataaaagtaatagaataattttcaatgttttctatactaaaatttgaaaaa |
2570080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 2570016 - 2569949
Alignment:
| Q |
173 |
accttgtgcattgtgattctttctataacattttatttattccaattaatgacataggtaagatctttg |
241 |
Q |
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| T |
2570016 |
accttgtgcattgtgattctctctatgacattgt-tttattccgattaatttcacaggtaagatctttg |
2569949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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