View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6111_high_1 (Length: 604)

Name: NF6111_high_1
Description: NF6111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6111_high_1
NF6111_high_1
[»] chr6 (4 HSPs)
chr6 (20-119)||(18871922-18872021)
chr6 (353-438)||(14107860-14107945)
chr6 (29-113)||(26217250-26217333)
chr6 (30-102)||(7618947-7619018)
[»] chr1 (2 HSPs)
chr1 (180-307)||(27537710-27537837)
chr1 (29-112)||(31141964-31142046)
[»] chr3 (4 HSPs)
chr3 (29-113)||(50152351-50152434)
chr3 (29-113)||(38044537-38044620)
chr3 (29-113)||(48837984-48838067)
chr3 (30-102)||(50903994-50904065)
[»] chr8 (2 HSPs)
chr8 (29-113)||(21634822-21634905)
chr8 (29-81)||(5515543-5515594)
[»] chr7 (8 HSPs)
chr7 (29-113)||(32089281-32089364)
chr7 (29-113)||(41706645-41706728)
chr7 (29-113)||(41812158-41812241)
chr7 (29-112)||(32096754-32096836)
chr7 (29-102)||(39128508-39128580)
chr7 (29-102)||(39478465-39478537)
chr7 (29-113)||(32087926-32088009)
chr7 (29-113)||(32093038-32093121)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 5e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 18871922 - 18872021
Alignment:
Q  20 tagaattgttttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtccccaatgggacaagataatg 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18871922 tagaattgttttgtgcgtgtcatctttgcgcaaggggccatgctaatcttgtctgtatcatttcaactttatcagatgtccccaatgggacaagataatg 18872021  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 438
Target Start/End: Original strand, 14107860 - 14107945
Alignment:
Q  353 aaattatttagtagaaactaagtagaaattgagattccaaatgaaagacgaaaatcacggataattcctaatgtaattcatatttt 438  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| | |||  |||||| ||||||| |||||    
T  14107860 aaattatttaatagaaactaagtagaaattgagattccaaatgatagaggaaaatcacagttaaaccctaatctaattcagatttt 14107945  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 26217250 - 26217333
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtccccaatgggacaag 113  Q
    ||||||||||||||| |||||||  ||||||||||||| || ||||||||||| ||| |||||| ||||||||| | ||||||||    
T  26217250 tttgtgcgtgtcatccttgcgcag-gggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaag 26217333  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 7618947 - 7619018
Alignment:
Q  30 ttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtcccc 102  Q
    ||||||||||||||||||||| | ||  ||||||||| || |||||||| || ||| |||||| |||||||||    
T  7618947 ttgtgcgtgtcatctttgcgc-atggatcatgctaatcttctctgtatcattccaattttatcggatgtcccc 7619018  T

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Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 180 - 307
Target Start/End: Complemental strand, 27537837 - 27537710
Alignment:
Q  180 attccctaaactacagtaaccattatatttatcagtacataccaaaattgagataagtataagcttgatcatagtattaaaatcggttagtcttgaattt 279  Q
    |||||||| |||||| |||||||||||| ||| | ||||| |||||||| |||||||||||| || | |||||||| || |||| || | ||||||||||    
T  27537837 attccctacactacactaaccattatatgtattattacatgccaaaattaagataagtataacctcgctcatagtagtagaatcagtgattcttgaattt 27537738  T
Q  280 tcataagttaggaacaacacaaattcat 307  Q
    ||||||| ||||| || |||||||||||    
T  27537737 tcataagctaggaccagcacaaattcat 27537710  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 31141964 - 31142046
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtccccaatgggacaa 112  Q
    ||||||||||||||| |||||||  ||||||||||||| || ||||||||||| ||| |||||| ||||||||| | |||||||    
T  31141964 tttgtgcgtgtcatccttgcgcag-gggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 31142046  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 50152434 - 50152351
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtccccaatgggacaag 113  Q
    ||||||||||||||| |||||||  ||||||||||||| || ||||||||||| ||| |||||||||||||||||| ||||||||    
T  50152434 tttgtgcgtgtcatccttgcgcag-gggccatgctaatcttctctgtatcgttccaattttatcagatgtccccaaagggacaag 50152351  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 38044537 - 38044620
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtccccaatgggacaag 113  Q
    ||||||||||||||| |||||||  ||||||||||||| || ||||||||||| ||| |||||| ||||||||| | ||||||||    
T  38044537 tttgtgcgtgtcatccttgcgcag-gggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaag 38044620  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 48838067 - 48837984
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtccccaatgggacaag 113  Q
    ||||||||||||||| |||||||  ||||||||||||| || ||||||||||| ||| |||||| ||||||||| | ||||||||    
T  48838067 tttgtgcgtgtcatccttgcgcag-gggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaag 48837984  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 50904065 - 50903994
Alignment:
Q  30 ttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtcccc 102  Q
    |||||||||||||| |||||||  ||||| ||||||| || ||||||||||| ||| |||||| |||||||||    
T  50904065 ttgtgcgtgtcatccttgcgcag-gggccttgctaatcttctctgtatcgttccaattttatcggatgtcccc 50903994  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 21634822 - 21634905
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtccccaatgggacaag 113  Q
    ||||||||||||||| |||||||  ||||||||||||| || ||||||||||| ||| |||||| ||||||||| | ||||||||    
T  21634822 tttgtgcgtgtcatccttgcgcag-gggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaag 21634905  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 5515594 - 5515543
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtt 81  Q
    |||||||||||||||||||||| ||||||||||||||| || |||||||||||    
T  5515594 tttgtgcgtgtcatctttgcgc-aagggccatgctaatcttctctgtatcgtt 5515543  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 32089281 - 32089364
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtccccaatgggacaag 113  Q
    ||||||||||||||| |||||||  ||||||||||||| || ||||||||||| ||| |||||| ||||||||| | ||||||||    
T  32089281 tttgtgcgtgtcatccttgcgcag-gggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaag 32089364  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 41706645 - 41706728
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtccccaatgggacaag 113  Q
    ||||||||||||||| |||||||  ||||||||||||| || ||||||||||| ||| |||||| ||||||||| | ||||||||    
T  41706645 tttgtgcgtgtcatccttgcgcag-gggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaag 41706728  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 41812241 - 41812158
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtccccaatgggacaag 113  Q
    ||||||||||||||| |||||||  ||||||||||||| || ||||||||||| ||| |||||| ||||||||| | ||||||||    
T  41812241 tttgtgcgtgtcatccttgcgcag-gggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaag 41812158  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 32096754 - 32096836
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtccccaatgggacaa 112  Q
    ||||||||||||||| |||||||  ||||||||||||| || ||||||||||| ||| |||||| ||||||||| | |||||||    
T  32096754 tttgtgcgtgtcatccttgcgcag-gggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaa 32096836  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 39128508 - 39128580
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtcccc 102  Q
    ||||||||||||||| |||||||  ||||||||||||| || ||||||||||| ||| |||||| |||||||||    
T  39128508 tttgtgcgtgtcatccttgcgcag-gggccatgctaatcttctctgtatcgttccaattttatcggatgtcccc 39128580  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 39478537 - 39478465
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtcccc 102  Q
    ||||||||||||||| |||||||  ||||||||||||| || ||||||||||| ||| |||||| |||||||||    
T  39478537 tttgtgcgtgtcatccttgcgcag-gggccatgctaatcttctctgtatcgttccaattttatcggatgtcccc 39478465  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 32087926 - 32088009
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtccccaatgggacaag 113  Q
    ||||||||||||||| ||| |||  |||||||| |||| || ||||||||||| ||| |||||||||||||||| | ||||||||    
T  32087926 tttgtgcgtgtcatccttgtgcag-gggccatgttaatcttctctgtatcgttccaattttatcagatgtccccgaagggacaag 32088009  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 32093038 - 32093121
Alignment:
Q  29 tttgtgcgtgtcatctttgcgcaaagggccatgctaattttgtctgtatcgtttcaactttatcagatgtccccaatgggacaag 113  Q
    ||||||||||||||| |||| ||  ||||||||||||| || ||||||||||| ||| |||||| ||||||||| | ||||||||    
T  32093038 tttgtgcgtgtcatccttgcacag-gggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacaag 32093121  T

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