View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6111_low_5 (Length: 304)
Name: NF6111_low_5
Description: NF6111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6111_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 14066747 - 14067007
Alignment:
| Q |
20 |
taggtgttccgtagttcatgccaccaaacttggcacctgatatcagaatcaggaatttgatcttgcttatcttctgaagtgctattccctaaannnnnnn |
119 |
Q |
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| T |
14066747 |
taggtgttccgtagttcatgccaccaaacttggcacctgatatcagaatcaggaatttgatcttgcttatcttctgaagtgctgctccctaaaattatca |
14066846 |
T |
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| Q |
120 |
nnnnnnnnnnnncttcaacgttcaataaaatcaattgcaatttaacatcaacctctaagtcaagtttaaccttcattatttcaccaataaagcattttat |
219 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14066847 |
tcatcatca---cttcaatgttcaatcaaatcaattgcaatttaacatcaacctctaagtcaagtttaaccttcattatttcaccaataaagcattttat |
14066943 |
T |
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| Q |
220 |
aatttatgataatggatggagaaaagggtcaacttgctggttcgaaaagagtgtgtgtgttcgg |
283 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14066944 |
aatttatgataatggatggagaaaagggtcaacttgttggttcgaaaagagtgtgtgtgttcgg |
14067007 |
T |
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