View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6112_high_6 (Length: 243)
Name: NF6112_high_6
Description: NF6112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6112_high_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 41940049 - 41939807
Alignment:
| Q |
1 |
ccaaagcttcccacaattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttctgcactcgaatgatttccctccgtgcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41940049 |
ccaaagcttcccacaattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttctgcactcgaatgatttccctccgtgcttt |
41939950 |
T |
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| Q |
101 |
ctcttgtagtgtgtttgaagggttctgaaatctttcagtggtcttgcccttggatagtttatattgtttctgcaaccctcagcacaacagtaacatggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41939949 |
ctcttgtagtgtgtttgaagggttctgaaatctttcagtggtcttgcccttggatagtttatattgtttctgcaaccctcagcacaacagtaacatggta |
41939850 |
T |
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| Q |
201 |
gtttcagcattgatgaagatgatgctggttttggcccttttag |
243 |
Q |
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| T |
41939849 |
gtttcagcattgatgaagatgatgctggttttggcccttttag |
41939807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21035657 - 21035710
Alignment:
| Q |
1 |
ccaaagcttcccacaattcttctcatgagtcctccaatctcctctcacagcaaa |
54 |
Q |
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| T |
21035657 |
ccaaagctttccacaattcttctcatgagttctccaatctcctctaacagcaaa |
21035710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 22295886 - 22296040
Alignment:
| Q |
1 |
ccaaagcttcccacaattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttctgcactcgaatgatttccctccgtgcttt |
100 |
Q |
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||||||||| ||||| || |||||||| || ||||| || ||||| || ||||||| |||| ||||||||| ||| | |||| || |||| ||||| |
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| T |
22295886 |
ccaaagctttccacagtttttctcatgtgttctccagtcacctctaactgcaaatggtttcccacactttctacacccaaatggctttgctccatgcttc |
22295985 |
T |
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| Q |
101 |
ctcttgtagtgtgtttgaagggttctgaaatctttcagtggtcttgcccttggat |
155 |
Q |
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| T |
22295986 |
ctcttgtagtgtgtttgaagtgttctgaaatccttgagtggccttgaccttggat |
22296040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 36570123 - 36569923
Alignment:
| Q |
1 |
ccaaagcttcccacaattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttctgcactcgaatgatttccctccgtgcttt |
100 |
Q |
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||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| | ||| || || ||||| ||| ||||| || ||| || ||| |
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| T |
36570123 |
ccaaagctttccacaattcttttcatgagttctccaatctcctctaacagcaaaagccttgctgcattttctacacatgaatggcttaattccatgtttt |
36570024 |
T |
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| Q |
101 |
ctcttgtagtgtgtttgaagggttctgaaatctttcagtggtcttgcccttggatagtttatattgtttctgcaaccctcagcacaacagtaacatggta |
200 |
Q |
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|||||||| ||||||||||| ||||| |||||||| || || |||| ||||||| | || ||||||||||| || |||||||||||||| |||| |
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| T |
36570023 |
ctcttgtaatgtgtttgaagtgttctaaaatctttgagaggctttgctcttggatgatcaatgttgtttctgcaccctggtgcacaacagtaacaaggta |
36569924 |
T |
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| Q |
201 |
g |
201 |
Q |
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| T |
36569923 |
g |
36569923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 41939612 - 41939458
Alignment:
| Q |
1 |
ccaaagcttcccacaattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttctgcactcgaatgatttccctccgtgcttt |
100 |
Q |
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|||||| |||||||| || ||||| ||||| ||||| || ||||| || ||||||| || | ||||||||| ||| |||| || ||| |||||| |
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| T |
41939612 |
ccaaagtttcccacagtttttctcgtgagttctccagtcacctcttactgcaaatgctttgcaacactttctacacataaatggctttattccatgcttt |
41939513 |
T |
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| Q |
101 |
ctcttgtagtgtgtttgaagggttctgaaatctttcagtggtcttgcccttggat |
155 |
Q |
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|||||||| ||||||||||| ||||| ||||||||||||||| |||| ||||||| |
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| T |
41939512 |
ctcttgtaatgtgtttgaagtgttctaaaatctttcagtggttttgctcttggat |
41939458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 212
Target Start/End: Original strand, 36259961 - 36260078
Alignment:
| Q |
95 |
tgctttctcttgtagtgtgtttgaagggttctgaaatctttcagtggtcttgcccttggatagtttatattgtttctgcaaccctcagcacaacagtaac |
194 |
Q |
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|||||||| ||||| || ||||| || ||||||||||| |||| |||| |||| ||||||| || || ||||| ||||||| | ||||||||| |||| |
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| T |
36259961 |
tgctttcttttgtaatgagtttggagagttctgaaatccttcaatggttttgctcttggatgattgatgttgttcttgcaaccgtgagcacaacaataac |
36260060 |
T |
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| Q |
195 |
atggtagtttcagcattg |
212 |
Q |
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|||||||| | ||||||| |
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| T |
36260061 |
atggtagtcttagcattg |
36260078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 19333551 - 19333490
Alignment:
| Q |
11 |
ccacaattcttctcatgagtcctccaatctcctctcacagcaaatgtcttcctacactttct |
72 |
Q |
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||||||||||| ||||||||||||||||| ||| | ||||||||||| |||| ||| ||||| |
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| T |
19333551 |
ccacaattcttttcatgagtcctccaatcacctttgacagcaaatgttttcccacattttct |
19333490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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