View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6112_low_1 (Length: 554)

Name: NF6112_low_1
Description: NF6112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6112_low_1
NF6112_low_1
[»] chr7 (2 HSPs)
chr7 (254-535)||(10209048-10209326)
chr7 (6-217)||(10208800-10209011)
[»] chr1 (5 HSPs)
chr1 (6-217)||(33358532-33358741)
chr1 (254-540)||(41474909-41475210)
chr1 (254-401)||(33358780-33358928)
chr1 (121-217)||(41475247-41475343)
chr1 (461-540)||(33358972-33359051)
[»] chr3 (2 HSPs)
chr3 (256-531)||(48117709-48117997)
chr3 (6-84)||(48117990-48118068)
[»] chr6 (2 HSPs)
chr6 (18-139)||(8890790-8890911)
chr6 (294-387)||(8890504-8890599)
[»] chr5 (2 HSPs)
chr5 (18-130)||(40883610-40883722)
chr5 (292-355)||(40883921-40883984)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 254 - 535
Target Start/End: Original strand, 10209048 - 10209326
Alignment:
Q  254 gtaatcacactctcagaatctctcataccttactttggcgatttcttttctgtttgtccatataaattgattaatcttcataatcaattgccaaaaattt 353  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10209048 gtaatcacactctcagaatctctcataccgtactttggcgatttcttttctgtttgtccatataaattgattaatcttcataatcaattgccaaaaattt 10209147  T
Q  354 caccaaataaatgaccctccacaatcttcatgcagtgcttacttttgacatcttatttaaaggttgtcgagaatttctaagcaacaaaatatgttaccaa 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||     
T  10209148 caccaaataaatgaccctccacaatcttcatgcagtgcttacttttgacctcttatttaagggttgtcgagaatttctaagcaacaaaatatgttacca- 10209246  T
Q  454 ataaaataattcctattgctaaagaaaaaatatgatatcaaatactacaatttaaatgtaaattacgatgaaatgatagatg 535  Q
      |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10209247 --aaaaaaattcctattgctaaagaaaaaatatgatatcaaatactacaatttaaatgcaaattacgatgaaatgatagatg 10209326  T

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Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 10208800 - 10209011
Alignment:
Q  6 acatcatcactaaagaagaagaaagtatatttgattattgaaaaacatttttatacctaattaggacaacaaataacacaaaagaagaaataaaggaaga 105  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10208800 acatcaacactaaagaggaagaaagtatatttgattattgaaaaacatttttatacctaattaggacaacaaataacacaaaagaagaaataaaggaaga 10208899  T
Q  106 aataaaccgtagaaagtatccatagcaccgtcaccacaatatttggttcccggtagcctatcgtgcttgcctccggcggccaacagtgtcgttcttttgt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  10208900 aataaaccgtagaaagtatccatagcaccgtcaccacaatatttggttcccggtagcctatcgtgcttacctccggcggccaacagtgtcgctcttttgt 10208999  T
Q  206 taatagaagacg 217  Q
    ||| ||||||||    
T  10209000 taacagaagacg 10209011  T

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Target: chr1 (Bit Score: 160; Significance: 5e-85; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 33358532 - 33358741
Alignment:
Q  6 acatcatcactaaagaagaagaaagtatatttgattattgaaaaacatttttatacctaattaggacaacaaataacacaaaagaagaaataaaggaaga 105  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33358532 acatcatcactaaagaagaagaaagtatatttgattatttaaaa-catttttatacctaattaggacaacaaataacacaaaagaagaaa-aaaggaaga 33358629  T
Q  106 aataaaccgtagaaagtatccatagcaccgtcaccacaatatttggttcccggtagcctatcgtgcttgcctccggcggccaacagtgtcgttcttttgt 205  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||  |||| ||    
T  33358630 aataaactgtagaaagtatccatagcaccgtcaccacaatatttggttcccgctagcctatcgtgcttgcctccggctgccaacaatgtcgccctttggt 33358729  T
Q  206 taatagaagacg 217  Q
    ||| ||||||||    
T  33358730 taacagaagacg 33358741  T

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Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 254 - 540
Target Start/End: Complemental strand, 41475210 - 41474909
Alignment:
Q  254 gtaatcacactctcagaatctctcataccttactttggcga--tttcttttctgtttgtccatataaattgattaatcttcataatcaattgccaaaaat 351  Q
    ||||||||||| || |||| ||||||||  |||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41475210 gtaatcacactttcggaatatctcatacagtactttggcgagatttcttttttgtttgtccatataaattgattaatcttcataatcaattgccaaaaat 41475111  T
Q  352 ttcaccaaataaatgaccctccacaatcttcatgcagtgcttacttt-----------------tgacatcttatttaaaggttgtcgagaatttctaag 434  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||                 |||| |||||||||| ||||||||||||||||||||    
T  41475110 ttcaccaaataaatgaccctccacaatcttcatgcaatgcttacttttgagcaaccatttactatgacctcttatttaagggttgtcgagaatttctaag 41475011  T
Q  435 caacaaaatatgttaccaaataaaataattcctattgctaaagaaaaaatatgatatcaaatactacaatttaaatgtaaattacgatgaaatgatagat 534  Q
    ||||||||||||| ||| || ||||    |||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||    
T  41475010 caacaaaatatgtcacccaaaaaaa----tcctatcgctaaagaaaaaatatgatatcaaatactataatttaaatgcaaattacgatgaaatgatacat 41474915  T
Q  535 ggaact 540  Q
    ||||||    
T  41474914 ggaact 41474909  T

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Target: chr1; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 254 - 401
Target Start/End: Original strand, 33358780 - 33358928
Alignment:
Q  254 gtaatcacactctcagaatctctcataccttactttggcgatttcttttctgtttgtccatataaattgattaatcttcataatcaattgccaaaaattt 353  Q
    ||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33358780 gtaatcacactctcagaatctctcatacagtactttggcgatttctgttctgtttgtccatataaattgattaatcttcataatcaattgccaaaaattt 33358879  T
Q  354 cacc-aaataaatgaccctccacaatcttcatgcagtgcttacttttga 401  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||    
T  33358880 caccaaaataaatgaccctccacaatcttcacgcagtgcttacttttga 33358928  T

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Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 41475343 - 41475247
Alignment:
Q  121 gtatccatagcaccgtcaccacaatatttggttcccggtagcctatcgtgcttgcctccggcggccaacagtgtcgttcttttgttaatagaagacg 217  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||||||    
T  41475343 gtatccatagcaccgtcaccacaatatttggttcccgctagcctattgtgcttgcctccggcggccaacaatgtcgctctttggttaacagaagacg 41475247  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 461 - 540
Target Start/End: Original strand, 33358972 - 33359051
Alignment:
Q  461 aattcctattgctaaagaaaaaatatgatatcaaatactacaatttaaatgtaaattacgatgaaatgatagatggaact 540  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  33358972 aattcatatcgctaaagaaaaaatataatatcaaatactacaatttaaatgcaaattacgatgaaatgatatatggaact 33359051  T

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Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 256 - 531
Target Start/End: Complemental strand, 48117997 - 48117709
Alignment:
Q  256 aatcacactctcagaatctctcataccttactttggcga--tttcttttctgtttgtccatataaattgattaatcttcataatcaattgccaaaaattt 353  Q
    ||||||||||||||||| ||||||||  |||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48117997 aatcacactctcagaatatctcatacagtactttggcgagatttcttttctgtctgtccatataaattgattaatcttcataatcaattgccaaaaattt 48117898  T
Q  354 caccaaataaatgaccctccacaatcttcatgcagtgcttacttt-----------------tgacatcttatttaaaggttgtcgagaatttctaagca 436  Q
    |||||||||||    ||||||||||||||||||||||||||||||                 |||| ||||||||||  |||||||||||||||||||||    
T  48117897 caccaaataaa----cctccacaatcttcatgcagtgcttacttttgagcaaccatttactatgacctcttatttaagcgttgtcgagaatttctaagca 48117802  T
Q  437 acaaaa-tatgttaccaaataaaataattcctattgctaaagaaaaaatatgatatcaaatactacaatttaaatgtaaattacgatgaaatgata 531  Q
    |||||| |||||   || | |||| || |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||    
T  48117801 acaaaagtatgt---cacaaaaaaaaaatcctatcgctaaagaaaaaatatgatatcaaatactacaatttaaatgcaaattaaaatgaaatgata 48117709  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 48118068 - 48117990
Alignment:
Q  6 acatcatcactaaagaagaagaaagtatatttgattattgaaaaacatttttatacctaattaggacaacaaataacac 84  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  48118068 acatcaacactaaagaagaagaaagtatatttgattattgaagaacatttttatacctaattaggacaacaaatcacac 48117990  T

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Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 8890911 - 8890790
Alignment:
Q  18 aagaagaagaaagtatatttgattattgaaaaacatttttatacctaattaggacaacaaataacacaaaagaagaaataaaggaagaaataaaccgtag 117  Q
    |||||| |||||||||||||||||||||||||| |||| ||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  8890911 aagaagtagaaagtatatttgattattgaaaaatatttatatagataattaggacaacaaataacacaaaagaagaaaaaaaggaagaaataaaccgaag 8890812  T
Q  118 aaagtatccatagcaccgtcac 139  Q
    |||||||||||||  |||||||    
T  8890811 aaagtatccatagtgccgtcac 8890790  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 294 - 387
Target Start/End: Complemental strand, 8890599 - 8890504
Alignment:
Q  294 atttcttttctgtttgtccatataaattgattaatcttcataatcaattgccaaaaatttcacca-aataa-atgaccctccacaatcttcatgca 387  Q
    ||||||||| ||||||| ||||||||||  ||||||||||| |||||||||||||||| |||||| ||||| ||||||||||| ||| || |||||    
T  8890599 atttcttttttgtttgttcatataaattagttaatcttcattatcaattgccaaaaatctcaccacaataatatgaccctccaaaatattgatgca 8890504  T

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Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 40883610 - 40883722
Alignment:
Q  18 aagaagaagaaagtatatttgattattgaaaaacatttttatacctaattaggacaacaaataacacaaaagaagaaataaaggaagaaataaaccgtag 117  Q
    |||||| |||||||||||||||||||||||||| |||| ||||  ||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||    
T  40883610 aagaagtagaaagtatatttgattattgaaaaatatttatatagataattaggacaacaaataacacagaagaagaaaaaaaggaagaaataaaccgaag 40883709  T
Q  118 aaagtatccatag 130  Q
    |||||||||||||    
T  40883710 aaagtatccatag 40883722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 40883921 - 40883984
Alignment:
Q  292 cgatttcttttctgtttgtccatataaattgattaatcttcataatcaattgccaaaaatttca 355  Q
    ||||||||||| ||||||| ||||||||||  ||||||||||| ||||||||||||||||||||    
T  40883921 cgatttcttttttgtttgttcatataaattagttaatcttcattatcaattgccaaaaatttca 40883984  T

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