View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6112_low_2 (Length: 511)

Name: NF6112_low_2
Description: NF6112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6112_low_2
NF6112_low_2
[»] chr5 (4 HSPs)
chr5 (9-502)||(40516664-40517157)
chr5 (120-168)||(42910475-42910523)
chr5 (126-185)||(5173786-5173845)
chr5 (125-166)||(8825465-8825506)
[»] chr7 (4 HSPs)
chr7 (315-383)||(39900868-39900936)
chr7 (102-170)||(39887629-39887697)
chr7 (121-166)||(36729584-36729629)
chr7 (120-166)||(47430762-47430808)
[»] chr1 (3 HSPs)
chr1 (126-193)||(43049436-43049503)
chr1 (107-166)||(38577926-38577986)
chr1 (126-168)||(13697233-13697275)
[»] scaffold0020 (1 HSPs)
scaffold0020 (120-157)||(172529-172566)
[»] chr3 (3 HSPs)
chr3 (102-166)||(4030229-4030293)
chr3 (407-451)||(44713-44757)
chr3 (407-451)||(13582390-13582434)
[»] chr8 (2 HSPs)
chr8 (119-166)||(3631174-3631221)
chr8 (120-153)||(28431397-28431430)
[»] chr4 (3 HSPs)
chr4 (108-166)||(30746107-30746165)
chr4 (120-167)||(32028235-32028282)
chr4 (125-158)||(36114915-36114948)
[»] chr2 (3 HSPs)
chr2 (126-166)||(16244926-16244966)
chr2 (119-167)||(36322714-36322762)
chr2 (119-162)||(9436122-9436165)


Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 9 - 502
Target Start/End: Original strand, 40516664 - 40517157
Alignment:
Q  9 catcatcatatgtctcttgagctcaggactttcactcatcaaaattattgtgcaacaagcaagtcactcatcaaaactattgtgcaatatgtgtgtcgga 108  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||| ||    
T  40516664 catcatcatatgtctcttgagctgaggactttcactcatcaaaattattgtgcaacaagcaattcactcatcaaaattattgttcaacatgtgtgtcaga 40516763  T
Q  109 atcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattcaaacacacgcacattgataccaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  40516764 atcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctataaaatcatagtaggttgtcgtgattcaaacacacgcacagtgataccaa 40516863  T
Q  209 atatatatttaatgctctgtaagtagatagattttcactactctatttgattgaattaaaacagtaagtttgaggtttataacgaaacatttgagcatag 308  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40516864 atatatacttaatgctctgcaagtagatagattttcactactctatttgattgaattaaaacagtaaatttgaggtttataacgaaacatttgagcatag 40516963  T
Q  309 tactgctcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacataataaacaatatataaactgcacaa 408  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40516964 tactggtcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacataataaacaatatataaactgcacaa 40517063  T
Q  409 ggcaagcgggtaataaactgcgccgccaggcctttttggatggtatagtacttgcattcgggttatccaaatctcaacaattccaactgatgat 502  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40517064 ggcaagcaggtaataaactgcgccgtcaggcctttttggatggcatagtacttgcattcgggttatccaaatctcaacaattccaactaatgat 40517157  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 42910523 - 42910475
Alignment:
Q  120 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcaca 168  Q
    ||||| |||||||||||||||| |||||||||||||||  |||||||||    
T  42910523 ccaccgtgatttttcaaaagctgcactttgtagcttctacaaaatcaca 42910475  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 5173845 - 5173786
Alignment:
Q  126 tgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattc 185  Q
    |||||||| |||| ||||| |||||||||||||||||||||| |||| |  |||||||||    
T  5173845 tgatttttaaaaatctacattttgtagcttctgtaaaatcacggtagatcaccgtgattc 5173786  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 8825465 - 8825506
Alignment:
Q  125 atgatttttcaaaagctacactttgtagcttctgtaaaatca 166  Q
    ||||||||| |||||||||| |||||| ||||||||||||||    
T  8825465 atgattttttaaaagctacattttgtaacttctgtaaaatca 8825506  T

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Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 39900936 - 39900868
Alignment:
Q  315 tcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacat 383  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  39900936 tcccatgcatgatactctacattgcattattcacattttcatcacgtaatgatggttaagactccacat 39900868  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 39887629 - 39887697
Alignment:
Q  102 tgtcggaatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcacagt 170  Q
    |||| |||||| || | |||||| ||||||| ||||||||||||||||||||||||| |||||||||||    
T  39887629 tgtcagaatcatggcgacccaccgtgattttccaaaagctacactttgtagcttctgcaaaatcacagt 39887697  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 36729584 - 36729629
Alignment:
Q  121 caccatgatttttcaaaagctacactttgtagcttctgtaaaatca 166  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||    
T  36729584 caccatgattttgcaaaagctacactttgtaggttttgtaaaatca 36729629  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 47430808 - 47430762
Alignment:
Q  120 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 166  Q
    |||| ||||||||| ||||||||||||| |||||||||| |||||||    
T  47430808 ccacaatgatttttaaaaagctacacttggtagcttctgcaaaatca 47430762  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 43049436 - 43049503
Alignment:
Q  126 tgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattcaaacacac 193  Q
    |||||||| |||||||||||||||||||||||| |||||||  || ||| |||||||||||| |||||    
T  43049436 tgattttttaaaagctacactttgtagcttctgcaaaatcatggtgggtcgccgtgattcaagcacac 43049503  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 38577986 - 38577926
Alignment:
Q  107 gaatcaaggtggcccaccatgatttttcaaaagctacactttgtagc-ttctgtaaaatca 166  Q
    |||||| | ||| ||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  38577986 gaatcacgttggtccaccttgattttccaaaagctacactttgtagctttctgtaaaatca 38577926  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 13697233 - 13697275
Alignment:
Q  126 tgatttttcaaaagctacactttgtagcttctgtaaaatcaca 168  Q
    ||||||||||||||||||||| ||||||||| | |||||||||    
T  13697233 tgatttttcaaaagctacactgtgtagcttcagcaaaatcaca 13697275  T

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Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 172529 - 172566
Alignment:
Q  120 ccaccatgatttttcaaaagctacactttgtagcttct 157  Q
    ||||||||||||||||||||||||||||||||||||||    
T  172529 ccaccatgatttttcaaaagctacactttgtagcttct 172566  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 4030293 - 4030229
Alignment:
Q  102 tgtcggaatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 166  Q
    |||| |||||| ||||| ||||  | ||||||||||||||||||||||||||||||| |||||||    
T  4030293 tgtcagaatcacggtggtccactgtaatttttcaaaagctacactttgtagcttctgcaaaatca 4030229  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 44713 - 44757
Alignment:
Q  407 aaggcaagcgggtaataaactgcgccgccaggcctttttggatgg 451  Q
    |||||||||||| || |||||||||||| || |||||||||||||    
T  44713 aaggcaagcgggcaacaaactgcgccgctagacctttttggatgg 44757  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 13582390 - 13582434
Alignment:
Q  407 aaggcaagcgggtaataaactgcgccgccaggcctttttggatgg 451  Q
    |||||||||||| ||||||| ||| ||| ||||||||||||||||    
T  13582390 aaggcaagcgggcaataaacagcgtcgctaggcctttttggatgg 13582434  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 3631174 - 3631221
Alignment:
Q  119 cccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 166  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||    
T  3631174 cccatcatgatttttcaaaagatacactttgtaacttctgtaaaatca 3631221  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 28431397 - 28431430
Alignment:
Q  120 ccaccatgatttttcaaaagctacactttgtagc 153  Q
    ||||||||||||||||||||||||||||| ||||    
T  28431397 ccaccatgatttttcaaaagctacactttatagc 28431430  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 30746165 - 30746107
Alignment:
Q  108 aatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 166  Q
    ||||||| || |||||||||||||||||||| | ||||||||||| ||||| |||||||    
T  30746165 aatcaagatgacccaccatgatttttcaaaaacaacactttgtaggttctgcaaaatca 30746107  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 32028235 - 32028282
Alignment:
Q  120 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcac 167  Q
    |||| |||||||||||||||||||||||| |||||| || ||||||||    
T  32028235 ccactatgatttttcaaaagctacactttatagcttatgcaaaatcac 32028282  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 36114915 - 36114948
Alignment:
Q  125 atgatttttcaaaagctacactttgtagcttctg 158  Q
    |||||||||||||||||||||||| |||||||||    
T  36114915 atgatttttcaaaagctacactttatagcttctg 36114948  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 16244966 - 16244926
Alignment:
Q  126 tgatttttcaaaagctacactttgtagcttctgtaaaatca 166  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  16244966 tgattttccaaaagctacactctgtagcttctgtaaaatca 16244926  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 36322714 - 36322762
Alignment:
Q  119 cccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcac 167  Q
    |||||| ||||||||||||| ||||||||||||||||||  ||||||||    
T  36322714 cccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcac 36322762  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 9436165 - 9436122
Alignment:
Q  119 cccaccatgatttttcaaaagctacactttgtagcttctgtaaa 162  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||    
T  9436165 cccactatgatttttcaaaaactacactttgtagtttctgtaaa 9436122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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