View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6112_low_4 (Length: 475)
Name: NF6112_low_4
Description: NF6112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6112_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 41939803 - 41939346
Alignment:
| Q |
1 |
ctccggtcctttcctatattgagatccatgtccccacatatgcatctaacatacaatataacaatatcataactagtaccnnnnnnnnnnnnnngaatca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41939803 |
ctccggtcctttcctatattgagatccatgtccccacatatgcatctaacatacaatataacaatatcataactagtaccatatatatat----gaatca |
41939708 |
T |
|
| Q |
101 |
tgttttgacattaatatagtaagctcaatatgattcattcaaggaagaaaagtaa---ggtacacaaaaatgacactatcttagtgctaattaaaaa-gg |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
41939707 |
tgttttgacattaatatagtaagctcaatatgattcattcaaggaagaaaagtaattaggtacacaaaaatgacactatcttagtgctaattaaaaaagg |
41939608 |
T |
|
| Q |
197 |
catattgagatttcaaaataagttcatgaatgatagatttaaaggcatggtttatgtttt--gagagaaaaatattgtaccaaatacttgatcatgtgat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41939607 |
catattgagatttcaaaataagttcatgaatgatagatttaaaggcatggtttatgttttatgagagaaaaatattgtaccaaatacttgatcatgtgat |
41939508 |
T |
|
| Q |
295 |
atggtgaatataaatgataaaaatataataatgaatgaacctgcatgttgttgaaacggttgaaggttttattgcaaacagtgcaagaaaactgtgtagg |
394 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
41939507 |
atggtgaatataaatgataaaaatataataatggatgaacctgcatgttgttgaaacggttgaaggttttgttgcaaacagtgcaagaaaactgggtagg |
41939408 |
T |
|
| Q |
395 |
accaacaaggatttgagcaggagaagggatccaatattgaggaataatgggagtgtgagatg |
456 |
Q |
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| T |
41939407 |
accaacaaggatttgagcaggagaagggatccaatattgaggaataatgggagtgtgagatg |
41939346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 332 - 430
Target Start/End: Original strand, 21038357 - 21038455
Alignment:
| Q |
332 |
aacctgcatgttgttgaaacggttgaaggttttattgcaaacagtgcaagaaaactgtgtaggaccaacaaggatttgagcaggagaagggatccaata |
430 |
Q |
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|||||||||||||||| | | |||||||||||| |||||||| ||||| || ||||||||||||| ||| || |||| ||||| |||||||||||| |
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| T |
21038357 |
aacctgcatgttgttgtatctgttgaaggttttgcagcaaacaggacaagagaattgtgtaggaccaataagaatctgagaaggagtagggatccaata |
21038455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 21035898 - 21035940
Alignment:
| Q |
5 |
ggtcctttcctatattgagatccatgtccccacatatgcatct |
47 |
Q |
| |
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| T |
21035898 |
ggtccttttctgtattgtgatccatgtccccacatatgcatct |
21035940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 332 - 434
Target Start/End: Original strand, 22296613 - 22296715
Alignment:
| Q |
332 |
aacctgcatgttgttgaaacggttgaaggttttattgcaaacagtgcaagaaaactgtgtaggaccaacaaggatttgagcaggagaagggatccaatat |
431 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||||| || |||||||| |||||||| || |||| |||||||||||||| ||||| ||||||||| |
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| T |
22296613 |
aacctgcatattattgaaacggttgaacattttattgcacactgtgcaagagaactgtgttggtccaatgaggatttgagcaggtgaaggaatccaatat |
22296712 |
T |
|
| Q |
432 |
tga |
434 |
Q |
| |
|
||| |
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|
| T |
22296713 |
tga |
22296715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 22296130 - 22296172
Alignment:
| Q |
5 |
ggtcctttcctatattgagatccatgtccccacatatgcatct |
47 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||||| |
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|
| T |
22296130 |
ggtccttttctgtattgtgatccatgtccccacatatgcatct |
22296172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 41939371 - 41939328
Alignment:
| Q |
5 |
ggtcctttcctatattgagatccatgtccccacatatgcatcta |
48 |
Q |
| |
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||||| || |||||||| |||||||||||||||||||||||||| |
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| T |
41939371 |
ggtccctttctatattgtgatccatgtccccacatatgcatcta |
41939328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 13516996 - 13517026
Alignment:
| Q |
17 |
tattgagatccatgtccccacatatgcatct |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
13516996 |
tattgagatccatgtccccacatatgcatct |
13517026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 13606529 - 13606559
Alignment:
| Q |
17 |
tattgagatccatgtccccacatatgcatct |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
13606529 |
tattgagatccatgtccccacatatgcatct |
13606559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 433
Target Start/End: Complemental strand, 36568535 - 36568470
Alignment:
| Q |
368 |
gcaaacagtgcaagaaaactgtgtaggaccaacaaggatttgagcaggagaagggatccaatattg |
433 |
Q |
| |
|
|||||||| |||||| ||||| || ||||||| || ||||||| ||||| ||||||||||||||| |
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| T |
36568535 |
gcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaatattg |
36568470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 19333317 - 19333276
Alignment:
| Q |
8 |
cctttcctatattgagatccatgtccccacatatgcatctaa |
49 |
Q |
| |
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||||||||| ||| ||||||||| |||||||||||||||||| |
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| T |
19333317 |
cctttcctaaattcagatccatgcccccacatatgcatctaa |
19333276 |
T |
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