View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6112_low_5 (Length: 386)
Name: NF6112_low_5
Description: NF6112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6112_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 4115297 - 4114946
Alignment:
| Q |
1 |
aaaaatatgtagtcaccttacttatatgatgttcatgttcatttatatctaacatgaaagtcatttactcacacttgacaggtcaacggcaacgacacac |
100 |
Q |
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| T |
4115297 |
aaaaatatgtagtcaccttacttatatgatgttcatgttcgtttatatctaacatgaaagttatttactcacacttgacacatcaacggcaatgacacac |
4115198 |
T |
|
| Q |
101 |
catcaactatgttgaatcttaaatctaatcttaaacttaaaatttggtcatatccgattttttatgagtctcaagttgcctgattgcaaggattcctgct |
200 |
Q |
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| T |
4115197 |
caccaactatgttcaatcttaaa------------cttaaaatttggtcatatccgattttttatgagtctcaagttgcctgattgcaaggattcctgct |
4115110 |
T |
|
| Q |
201 |
aaaattttgctcgatctttgcaattttatccaaaatgtgtaaagcatcattagacgtgtgctctctatacgttatattcacttcagttgtcatagtttaa |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4115109 |
aaaattttgctcgattattgcaattttatccaaaatgtctaaagcatcattagacgtgtgctctctatacgttatattcacttcagttgtcatagtttaa |
4115010 |
T |
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| Q |
301 |
ttttggtcaatgtttgatttcaataatagccaaaattccaacaaattgcttaagtattgtttgt |
364 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4115009 |
ttttggtcaatgtatgatttcaataatagccaaaattccaacaaattgcttaagtattgtttgt |
4114946 |
T |
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