View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6112_low_6 (Length: 330)

Name: NF6112_low_6
Description: NF6112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6112_low_6
NF6112_low_6
[»] chr4 (1 HSPs)
chr4 (16-330)||(4115356-4115670)
[»] chr5 (4 HSPs)
chr5 (246-330)||(39730279-39730363)
chr5 (242-297)||(14138559-14138614)
chr5 (239-297)||(2243322-2243380)
chr5 (242-294)||(7113623-7113675)
[»] chr3 (1 HSPs)
chr3 (244-330)||(39341215-39341303)
[»] chr6 (4 HSPs)
chr6 (244-296)||(32047190-32047242)
chr6 (242-297)||(32342614-32342669)
chr6 (248-297)||(7556122-7556171)
chr6 (244-296)||(23577167-23577219)
[»] chr8 (2 HSPs)
chr8 (239-297)||(35574646-35574704)
chr8 (236-297)||(32166641-32166702)
[»] chr1 (3 HSPs)
chr1 (242-296)||(10775177-10775231)
chr1 (242-297)||(46080985-46081040)
chr1 (242-295)||(52432675-52432728)
[»] chr7 (2 HSPs)
chr7 (242-297)||(32138892-32138947)
chr7 (247-297)||(23944095-23944145)
[»] chr2 (2 HSPs)
chr2 (242-297)||(16576262-16576317)
chr2 (244-297)||(38576943-38576996)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 4115670 - 4115356
Alignment:
Q  16 gactaaagtgaaaatactaacacattgacaataaagataaacccaacacaccaattgacaaggtgccgtcgtctctttgtgtggatatcattataactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4115670 gactaaagtgaaaatactaacacattgacaataaagataaacccaacacaccaattgacaaggtgccgtcgtctctttgtgtggatatcattataactaa 4115571  T
Q  116 gtgctgagaagtgagaaactgtagacttgaactcaggcaacaatatatcatgttcttgtgatatgacaatatatcacattcatagaaaaatctagctcac 215  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4115570 gtgctgagaagtgagaaactgtagatttgaattcgggcaacaatatatcatgttcttgtgatatgacaatatatcacattcatagaaaaatctagctcac 4115471  T
Q  216 cgatatggnnnnnnnnnnnnactattaattaccattttcatcttaagaacatgaaacttatccatctcattcattcaacatgatctccgtttaccttatt 315  Q
    ||||||||            |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||    
T  4115470 cgatatggttttttctttttactattaattaccatttttatcttaagaacatgaaacttctccatctcattcattcaacatgatctccgtttatcttgtt 4115371  T
Q  316 ccaaaattgaatctt 330  Q
    |||||||||||||||    
T  4115370 ccaaaattgaatctt 4115356  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 39730363 - 39730279
Alignment:
Q  246 accattttcatcttaagaacatgaaacttatccatctcattcattcaacatgatctccgtttaccttattccaaaattgaatctt 330  Q
    ||||||||||||| |||||||| |||||| | |||||| |||||| |||||||||| | ||||| || ||| |||||||||||||    
T  39730363 accattttcatctcaagaacatcaaactttttcatctctttcatttaacatgatcttcatttactttgttctaaaattgaatctt 39730279  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 14138559 - 14138614
Alignment:
Q  242 aattaccattttcatcttaagaacatgaaacttatccatctcattcattcaacatg 297  Q
    ||||||||||||||||||||||| || ||||||   |||||| |||||||||||||    
T  14138559 aattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatg 14138614  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 2243380 - 2243322
Alignment:
Q  239 attaattaccattttcatcttaagaacatgaaacttatccatctcattcattcaacatg 297  Q
    |||| ||||||||||||||| |||||||| |||||| | ||| || |||||||||||||    
T  2243380 attagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatg 2243322  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 7113675 - 7113623
Alignment:
Q  242 aattaccattttcatcttaagaacatgaaacttatccatctcattcattcaac 294  Q
    ||||| ||||||||||| ||||| || |||||| | |||||||||||||||||    
T  7113675 aattatcattttcatctcaagaatattaaacttcttcatctcattcattcaac 7113623  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 39341215 - 39341303
Alignment:
Q  244 ttaccattttcatcttaagaacatgaaacttatccatctcattcattcaacat--gatctccgtttaccttattccaaaattgaatctt 330  Q
    ||||||||||||||||||||| || |||||| | |||||| ||||||||||||  ||||||| ||||| |  ||| |||||||||||||    
T  39341215 ttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatctt 39341303  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 32047190 - 32047242
Alignment:
Q  244 ttaccattttcatcttaagaacatgaaacttatccatctcattcattcaacat 296  Q
    ||||||||||||||| |||||||| |||||| | |||||||||||||||||||    
T  32047190 ttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacat 32047242  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 32342614 - 32342669
Alignment:
Q  242 aattaccattttcatcttaagaacatgaaacttatccatctcattcattcaacatg 297  Q
    ||||| ||||||||||| || ||||| |||||| | ||||||||||||||||||||    
T  32342614 aattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatg 32342669  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 7556171 - 7556122
Alignment:
Q  248 cattttcatcttaagaacatgaaacttatccatctcattcattcaacatg 297  Q
    ||||||||||| |||||||| ||| |||| ||| ||||||||||||||||    
T  7556171 cattttcatctcaagaacattaaatttattcatatcattcattcaacatg 7556122  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 23577167 - 23577219
Alignment:
Q  244 ttaccattttcatcttaagaacatgaaacttatccatctcattcattcaacat 296  Q
    ||||||||||||||| || ||||| | |||| |||||||| ||||||||||||    
T  23577167 ttaccattttcatctcaaaaacatcatacttctccatctccttcattcaacat 23577219  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 35574704 - 35574646
Alignment:
Q  239 attaattaccattttcatcttaagaacatgaaacttatccatctcattcattcaacatg 297  Q
    |||| |||| ||||||||||||||||||| ||| || | ||||||||||||||||||||    
T  35574704 attagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatg 35574646  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 32166702 - 32166641
Alignment:
Q  236 actattaattaccattttcatcttaagaacatgaaacttatccatctcattcattcaacatg 297  Q
    ||||| ||||| ||||||||||| |||||||| |||||| | |||||| || ||||||||||    
T  32166702 actatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatg 32166641  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 10775177 - 10775231
Alignment:
Q  242 aattaccattttcatcttaagaacatgaaacttatccatctcattcattcaacat 296  Q
    |||||||||||||||||||||||||| |||||| | |||||| ||| ||||||||    
T  10775177 aattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacat 10775231  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 46080985 - 46081040
Alignment:
Q  242 aattaccattttcatcttaagaacatgaaacttatccatctcattcattcaacatg 297  Q
    ||||||||||||||||| |||||||| |||||| | |||||| |||| ||||||||    
T  46080985 aattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatg 46081040  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 52432675 - 52432728
Alignment:
Q  242 aattaccattttcatcttaagaacatgaaacttatccatctcattcattcaaca 295  Q
    ||||||||||||||||| |||||||| |||||| | |||||| |||||| ||||    
T  52432675 aattaccattttcatctcaagaacattaaacttcttcatctccttcatttaaca 52432728  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 32138947 - 32138892
Alignment:
Q  242 aattaccattttcatcttaagaacatgaaacttatccatctcattcattcaacatg 297  Q
    |||||||||||||||||||||||||| ||| || | |||||| ||| |||||||||    
T  32138947 aattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatg 32138892  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 23944095 - 23944145
Alignment:
Q  247 ccattttcatcttaagaacatgaaacttatccatctcattcattcaacatg 297  Q
    ||||||||||||||||||||| |||||| | | |||| |||||||||||||    
T  23944095 ccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatg 23944145  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 16576262 - 16576317
Alignment:
Q  242 aattaccattttcatcttaagaacatgaaacttatccatctcattcattcaacatg 297  Q
    ||||||||||||| ||| |||||||| |||||| | |||||| |||||||||||||    
T  16576262 aattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatg 16576317  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 38576996 - 38576943
Alignment:
Q  244 ttaccattttcatcttaagaacatgaaacttatccatctcattcattcaacatg 297  Q
    ||||||||||||||| |||||||| ||| || | |||||| |||||||||||||    
T  38576996 ttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatg 38576943  T

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