View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6112_low_7 (Length: 284)

Name: NF6112_low_7
Description: NF6112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6112_low_7
NF6112_low_7
[»] chr7 (14 HSPs)
chr7 (3-277)||(22069431-22069705)
chr7 (37-277)||(22062996-22063236)
chr7 (27-277)||(22080200-22080450)
chr7 (92-264)||(22088002-22088174)
chr7 (37-113)||(6865428-6865504)
chr7 (40-105)||(20338293-20338358)
chr7 (67-174)||(20375073-20375180)
chr7 (42-113)||(20141449-20141520)
chr7 (42-167)||(20133894-20134018)
chr7 (217-264)||(20338458-20338505)
chr7 (217-254)||(661187-661224)
chr7 (96-164)||(661262-661330)
chr7 (217-261)||(6865292-6865336)
chr7 (65-113)||(20126769-20126817)
[»] chr1 (1 HSPs)
chr1 (41-167)||(15960577-15960703)
[»] chr4 (1 HSPs)
chr4 (97-173)||(11982290-11982366)
[»] chr5 (2 HSPs)
chr5 (229-264)||(29641902-29641937)
chr5 (139-167)||(23086148-23086176)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 277
Target Start/End: Original strand, 22069431 - 22069705
Alignment:
Q  3 atcatacaatatgtatatcaggacttgcatggaagtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatcct 102  Q
    |||| ||||||| |||  ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22069431 atcaaacaatatctattccaggactggcacggaaatgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatcct 22069530  T
Q  103 tactatcaactgaaggacaaggattgccgctacatagttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggacaatgggg 202  Q
    ||||||| |||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22069531 tactatccactgaacgacaaggctttccgctacatagttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggacaatgggg 22069630  T
Q  203 ggtatagagagaattggcttcgtttttggaacccagccacaaggataatatcagaaaaattacatggtgatgatg 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22069631 ggtatagagagaattggcttcgtttttggaacccagccacaaggataatatcagaaaaatttcatggtgatgatg 22069705  T

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Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 37 - 277
Target Start/End: Original strand, 22062996 - 22063236
Alignment:
Q  37 gtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgctaca 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| ||||||||||||| |||||    
T  22062996 gtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaaaaaatccttaccatcaactgaatgacaaggattgccactaca 22063095  T
Q  137 tagttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggacaatggggggtatagagagaattggcttcgtttttggaaccc 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22063096 tcgttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggacaatggggggtatagagagaattggcttcgtttttggaaccc 22063195  T
Q  237 agccacaaggataatatcagaaaaattacatggtgatgatg 277  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  22063196 agccacaaggataatatcagaaaaatttcatggtgatgatg 22063236  T

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Target: chr7; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 27 - 277
Target Start/End: Original strand, 22080200 - 22080450
Alignment:
Q  27 ttgcatggaagtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggat 126  Q
    ||||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||| ||| ||||| |||||     
T  22080200 ttgcatggtcgtgaccttcacagttttccgtttgctcgagaaccctcccatcattatcaatctttcaaaatatccttactatcgactcaaggaaaaggac 22080299  T
Q  127 tgccgctacatagttggttcctgcaatggattgctttgcttatttggcggaactggctatagagaggacaatggggggtatagagagaattggcttcgtt 226  Q
    |||  | |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  22080300 tgcttccacattgttggttcctgcaatggattgctttgcttatttggcggaactggcaatagagaggacactggggggtatagagagaattggcttcgtt 22080399  T
Q  227 tttggaacccagccacaaggataatatcagaaaaattacatggtgatgatg 277  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  22080400 tttggaacccagccacaaggacaatatcagaaaaattagatggtgatgatg 22080450  T

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Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 92 - 264
Target Start/End: Original strand, 22088002 - 22088174
Alignment:
Q  92 caagagatccttactatcaactgaaggacaaggattgccgctacatagttggttcctgcaatggattgctttgcttatttggcggaactggctatagaga 191  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||  |||||||     
T  22088002 caagagatccttactatcaactgacggacaaggattgccgctacatcattggttcctgcaatggattgctttgcttattcggcggaagtgagtatagagc 22088101  T
Q  192 ggacaatggggggtatagagagaattggcttcgtttttggaacccagccacaaggataatatcagaaaaatta 264  Q
    |||| | || |||||||||||||| ||  ||||| |||||||||| |||||||||| ||||||||||||||||    
T  22088102 ggacgaaggagggtatagagagaaatgaattcgtgtttggaacccggccacaaggacaatatcagaaaaatta 22088174  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 6865504 - 6865428
Alignment:
Q  37 gtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaact 113  Q
    ||||||||||| ||| | |||||||| ||| |||||||||||||||||||||||||  |||||||||| ||||||||    
T  6865504 gtgtccttcactgttcttcgtttgcttgagtaccctccaatcattatcaatcttcctggagatccttattatcaact 6865428  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 20338293 - 20338358
Alignment:
Q  40 tccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttac 105  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||  ||||||||||    
T  20338293 tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttac 20338358  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 20375180 - 20375073
Alignment:
Q  67 aaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgctacatagttggttcctgcaatggattgctttgct 166  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||||  | |||||  |  ||| | |||||||||| || ||||||||||| || ||||    
T  20375180 aaccctccaatcattttcaatcttccagaagatccttactatcaacttgatgacaaacacggcctcgacatagttggctcttgcaatggattactctgct 20375081  T
Q  167 tatttggc 174  Q
    | ||||||    
T  20375080 tgtttggc 20375073  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 20141520 - 20141449
Alignment:
Q  42 cttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaact 113  Q
    |||||| ||||| ||||||||| | ||||||||||||||||||||||| |||  ||||||| || |||||||    
T  20141520 cttcactgtttttcgtttgctccacaaccctccaatcattatcaatctaccagaagatcctaaccatcaact 20141449  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 20134018 - 20133894
Alignment:
Q  42 cttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgctacatagtt 141  Q
    |||||| ||||| ||||||||| ||||||||||||||| || ||||||||||  ||||||| || ||||||| | | ||||||| || |  ||  | |||    
T  20134018 cttcactgtttttcgtttgctccagaaccctccaatca-taccaatcttccagaagatcctaaccatcaacttacgaacaaggactgtcattatgttgtt 20133920  T
Q  142 ggttcctgcaatggattgctttgctt 167  Q
    ||||| ||||||||||| || |||||    
T  20133919 ggttcatgcaatggattactctgctt 20133894  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 20338458 - 20338505
Alignment:
Q  217 tggcttcgtttttggaacccagccacaaggataatatcagaaaaatta 264  Q
    |||||||||||||||||||| |||||||||| |||||| | |||||||    
T  20338458 tggcttcgtttttggaaccctgccacaaggaaaatatctgcaaaatta 20338505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 661224 - 661187
Alignment:
Q  217 tggcttcgtttttggaacccagccacaaggataatatc 254  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  661224 tggcttcgtttttggaacccggccacaaggacaatatc 661187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 661330 - 661262
Alignment:
Q  96 agatccttactatcaactgaaggacaaggattgccgctacatagttggttcctgcaatggattgctttg 164  Q
    ||||||||||||||||||    |||||  |||||||| | || |||||||| |||||||||||||||||    
T  661330 agatccttactatcaacttgctgacaaatattgccgccatattgttggttcttgcaatggattgctttg 661262  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 6865336 - 6865292
Alignment:
Q  217 tggcttcgtttttggaacccagccacaaggataatatcagaaaaa 261  Q
    ||||||||||||||||||||||||| ||||| | |||| ||||||    
T  6865336 tggcttcgtttttggaacccagccataaggaaattatcggaaaaa 6865292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 20126817 - 20126769
Alignment:
Q  65 agaaccctccaatcattatcaatcttccaagagatccttactatcaact 113  Q
    ||||||||||| ||||| ||||||||||||  ||||| |||||||||||    
T  20126817 agaaccctccattcattttcaatcttccaaaggatccatactatcaact 20126769  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 15960577 - 15960703
Alignment:
Q  41 ccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactgaaggacaaggattgccgctacatagt 140  Q
    ||||||||||||| ||||||||||| ||||||||||||||| | |||||||| | ||||||||| |||||| | || |||||||||||   ||| || ||    
T  15960577 ccttcacagtttttcgtttgctcgaaaaccctccaatcatttttaatcttcccaaagatccttattatcaatttaaagacaaggattgtgtctatattgt 15960676  T
Q  141 tggttcctgcaatggattgctttgctt 167  Q
    |||||| ||||||||||||||||||||    
T  15960677 tggttcttgcaatggattgctttgctt 15960703  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 11982366 - 11982290
Alignment:
Q  97 gatccttactatcaactgaaggacaaggattgccgctacatagttggttcctgcaatggattgctttgcttatttgg 173  Q
    ||||||||||||||||||||||||||||| ||   | | ||  |||||||||||||||| ||||||||||| |||||    
T  11982366 gatccttactatcaactgaaggacaaggactgtgtccatattattggttcctgcaatggtttgctttgcttgtttgg 11982290  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Original strand, 29641902 - 29641937
Alignment:
Q  229 tggaacccagccacaaggataatatcagaaaaatta 264  Q
    |||||||||||||||||||||||||| |||||||||    
T  29641902 tggaacccagccacaaggataatatcggaaaaatta 29641937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 23086148 - 23086176
Alignment:
Q  139 gttggttcctgcaatggattgctttgctt 167  Q
    |||||||||||||||||||||||||||||    
T  23086148 gttggttcctgcaatggattgctttgctt 23086176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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