View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6113_high_6 (Length: 275)
Name: NF6113_high_6
Description: NF6113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6113_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 13846751 - 13847015
Alignment:
| Q |
19 |
tcaacaataaacattgtgttttccgttaaagtcaact------------cattttaacacgtagtaatgcattcgggatgttttcgtgaacaattagttc |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13846751 |
tcaacaataaacattgtgtttaccgttaaagtcaactattgaagtggttcattttagcacgtagtaatgcattcgggatgatttcgtgaacaattagttc |
13846850 |
T |
|
| Q |
107 |
gctgtata--gcggtgttctaatatttgttagttcttatttccctaacagaatttaagtgtatgtatttctcatcattttaccttgctctacccgtacc- |
203 |
Q |
| |
|
| |||||| || ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13846851 |
gttgtatatagcagtgttctaatatttgttagttctcatttccccaacagaatttaagtgcatgtatttctcatcattttaccttgctctacccttacca |
13846950 |
T |
|
| Q |
204 |
-nnnnnnnnnnnnnncttgctctccacctctaaaaatagaataaacttgctctcaatagtattat |
267 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13846951 |
aaaaaaaaaaaaaaacttgccctccacctctaaaaatagaataaacttgctctcaatagtattat |
13847015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University