View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6113_low_11 (Length: 249)
Name: NF6113_low_11
Description: NF6113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6113_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 32590662 - 32590441
Alignment:
| Q |
11 |
cataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtcaaattaat |
110 |
Q |
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| T |
32590662 |
cataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaaaattaat |
32590563 |
T |
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| Q |
111 |
atgataactcacattccaacattatacaatgtcactttttgcgtaataattgagtcatgaaagaaaagaaaaaatcaattattttcttcattttcctata |
210 |
Q |
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| T |
32590562 |
atgataattcacattctcacattatacgatgtctctttttgcataataattgaatcatgaaagaaaag--aaaaccaattattttcttcattttcctata |
32590465 |
T |
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| Q |
211 |
ttatgaccaactaactttattcct |
234 |
Q |
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|||||||||||||||||||||||| |
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| T |
32590464 |
ttatgaccaactaactttattcct |
32590441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 32601133 - 32601022
Alignment:
| Q |
11 |
cataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtcaaattaat |
110 |
Q |
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| T |
32601133 |
cataggggatgggaagatcctgctacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaaaattaat |
32601034 |
T |
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| Q |
111 |
atgataactcac |
122 |
Q |
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|||||||||||| |
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| T |
32601033 |
atgataactcac |
32601022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 32600946 - 32600892
Alignment:
| Q |
179 |
aaaaaatcaattattttcttcattttcctatattatgaccaactaactttattcc |
233 |
Q |
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| T |
32600946 |
aaaaaatcaattattttcttcattttcttatattatgaccaactaactttattcc |
32600892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 24883380 - 24883434
Alignment:
| Q |
47 |
agtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt |
101 |
Q |
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| T |
24883380 |
agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggt |
24883434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 34594181 - 34594091
Alignment:
| Q |
11 |
cataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt |
101 |
Q |
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| T |
34594181 |
cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggt |
34594091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 34578470 - 34578398
Alignment:
| Q |
22 |
ggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattgg |
94 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||| || || ||||| ||||||||||| |
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| T |
34578470 |
ggaagatcctgcaacgtgggccaaaagtgtgggaaatagttggagaaccacgggtgatatagaagataattgg |
34578398 |
T |
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