View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6113_low_12 (Length: 243)
Name: NF6113_low_12
Description: NF6113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6113_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 5128535 - 5128360
Alignment:
| Q |
52 |
ttatagtaaaatacatgtataagttatagtagtggnnnnnnnn--actcaattaattagagtagttgaaagtagattgtggaattcaaattttgtttttg |
149 |
Q |
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| T |
5128535 |
ttatagtaaaatacatgtataagttatagtagtggttttttttttactcaattaattagagtagttgaaagtagattgtggaattcaaattttgtttttg |
5128436 |
T |
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| Q |
150 |
tcttaaacttctggtttccaacggggtaatttgaagttcggttaggtggtaaagtcggacaaagtatagtaaaata |
225 |
Q |
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| T |
5128435 |
tcttaaacttctggtttccaacggggtaatttgaagttcggttaggtggtaaagtcggacaaagtatagtaaaata |
5128360 |
T |
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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 5129294 - 5129235
Alignment:
| Q |
1 |
catttatgaattactgtcttatcatttgtcagtnnnnnnngttggttgcaattatagtaa |
60 |
Q |
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| T |
5129294 |
catttatgaattactgtcttatcatttgtcagtaaaaaaagttggttgcaattatagtaa |
5129235 |
T |
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