View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6113_low_3 (Length: 350)
Name: NF6113_low_3
Description: NF6113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6113_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 166 - 343
Target Start/End: Original strand, 1050250 - 1050426
Alignment:
| Q |
166 |
cctaattaagtactctc--agttgcaactaattgcattatttcagttggtctgtatatagatatatagctatcagaaacattgagaatgtgagatcagac |
263 |
Q |
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| T |
1050250 |
cctaattaagtactctcttagttgcaactaattg---tatttcagttggtctatatatagatatatagctatcagaaacattgagaatgtgagatcagac |
1050346 |
T |
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| Q |
264 |
atagtataaattaaatacattaggcaccctaccatctgcttatactttgttgtgtccactgctctatcgttttcatctct |
343 |
Q |
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| T |
1050347 |
atagtataaattaaatacattaggcaccccaccatctgcttatactttgttgtgtccactgctctatcgttttcatctct |
1050426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 1050172 - 1050218
Alignment:
| Q |
7 |
gaccaagatatagtacctgaaccaaacatgaagacatagcctgaagt |
53 |
Q |
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| T |
1050172 |
gaccaagatatagcacctgaaccaaacatgaagacatagcctgaagt |
1050218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 1050218 - 1050252
Alignment:
| Q |
69 |
tagatctcctgcatagtcagaatttgaccatccct |
103 |
Q |
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| T |
1050218 |
tagatctcctccatagtcagaatttgaccatccct |
1050252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 7849230 - 7849291
Alignment:
| Q |
40 |
acatagcctgaagtgctctttctatcatctagatctcctgcatagtcagaatttgaccatcc |
101 |
Q |
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| T |
7849230 |
acatagcctgaagtacttttcctatcatccaaatctcctgcataatcagaatcagaccatcc |
7849291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 42971663 - 42971607
Alignment:
| Q |
35 |
tgaagacatagcctgaagtgctctttctatcatctagatctcctgcatagtcagaat |
91 |
Q |
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| T |
42971663 |
tgaagacatagcatgaggtactcttcctatcatccaaatctcctgcatagtctgaat |
42971607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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