View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6113_low_4 (Length: 339)
Name: NF6113_low_4
Description: NF6113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6113_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 96 - 339
Target Start/End: Original strand, 26184659 - 26184923
Alignment:
| Q |
96 |
cacgtggggaagtggtggtccattctgtcttgcacgtgagttgcagtaaaagattgtgtcagtcacggttactatgatatccaatatgtcctacattatg |
195 |
Q |
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| T |
26184659 |
cacgtggggaagtggtggtccattctgtcttgcacgtgagttgcagtaaaagattgtgtcagtcacggttactatgatatccaatatgtcctacattatg |
26184758 |
T |
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| Q |
196 |
tggaatccaaacacaggttaggtgatcgatg---------------------tgtttatgatcttaaattgttgattggttagatgaaaaaatagttaaa |
274 |
Q |
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| T |
26184759 |
tggaatccaaacacaggttaggtgatcgatgtgtttaaccaaaatattgatatgtttatgatcttaaattgttgattggttagatgaaaaaatagttaaa |
26184858 |
T |
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| Q |
275 |
gtaaataaatgattgtgatagaacctactccaataatgaggggtacatctgatttagattcccct |
339 |
Q |
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| T |
26184859 |
gtaaataaatgattgtgatagaacctactccaataatgaggggtacatctgatttagattcccct |
26184923 |
T |
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Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 26184546 - 26184614
Alignment:
| Q |
30 |
aaagtgtacccaaaaacgaacctaaatagaatatctgttccattgtgtttgtgaagatcagttatgcac |
98 |
Q |
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| T |
26184546 |
aaagtgtacccaaaaacgaacctaaatagaatatctgttccattgtgtttgtgaagatcagttatgcac |
26184614 |
T |
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