View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6114_low_1 (Length: 320)
Name: NF6114_low_1
Description: NF6114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6114_low_1 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 2326539 - 2326233
Alignment:
| Q |
14 |
aaaaacaagcaaacagaacatagcataatgaaagtgtggaataactgtaacataatctgtagattctgatgcagttttgagacggttgatgagagtgtgt |
113 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2326539 |
aaaaacaagtaaacagaacatagcataatgaaagtgtggaataactgtaacataatctgtagattctgatgcaattttgagacggttgatgagagtgtgt |
2326440 |
T |
|
| Q |
114 |
agaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggaggcgaggttacaacagagggtacgccatgttgggccataaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| ||||||||||||||||| |
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| T |
2326439 |
agaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcagaggcgaggttacgacggagggtacaccatgttgggccataaa |
2326340 |
T |
|
| Q |
214 |
aagcggcgctgatgttgtgctggttgctagatatgagtttgtgattgggaagtgctttaggacgatcggagaagagagatgaattttgaacgagagcgtg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2326339 |
aagcggcgctgatgttgtgctggttgctagatatgagtttgtgactgggaagtgctttaggacgatcggagaagagagatgaattttgaacgagggcgtg |
2326240 |
T |
|
| Q |
314 |
gtgggcc |
320 |
Q |
| |
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||||||| |
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| T |
2326239 |
gtgggcc |
2326233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 2330254 - 2329948
Alignment:
| Q |
14 |
aaaaacaagcaaacagaacatagcataatgaaagtgtggaataactgtaacataatctgtagattctgatgcagttttgagacggttgatgagagtgtgt |
113 |
Q |
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||||||||| ||||| || | ||||||| ||||||| | || || |||||| |||| |||||| ||||||||||||||||||||||||||||| || |
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| T |
2330254 |
aaaaacaagtaaacaaaatacagcataacgaaagtgagaaacgaccgtaacagaatcctcagattccgatgcagttttgagacggttgatgagagtctgc |
2330155 |
T |
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| Q |
114 |
agaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggaggcgaggttacaacagagggtacgccatgttgggccataaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |||||||||||||| ||||||| |
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| T |
2330154 |
agaacccacttccgaatttcagagaatgatttgatcttagatggatgaagcatctcggaggcgaggttacgacggagagtacgccatgttggtccataaa |
2330055 |
T |
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| Q |
214 |
aagcggcgctgatgttgtgctggttgctagatatgagtttgtgattgggaagtgctttaggacgatcggagaagagagatgaattttgaacgagagcgtg |
313 |
Q |
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|||||| |||||| |||||||||||||| || |||||||||| | |||||||||||||||||||||| ||||||| || || ||||||||||||||||| |
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| T |
2330054 |
aagcggagctgatattgtgctggttgctggacatgagtttgttagtgggaagtgctttaggacgatcagagaagacggaggagttttgaacgagagcgtg |
2329955 |
T |
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| Q |
314 |
gtgggcc |
320 |
Q |
| |
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||||||| |
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| T |
2329954 |
gtgggcc |
2329948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 2320625 - 2320458
Alignment:
| Q |
74 |
agattctgatgcagttttgagacggttgatgagagtgtgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggag |
173 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||| |
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| T |
2320625 |
agattccgatgcagttttgagacggttgatgagagtgtgtaagacccacttccgaatttctgagaacgatttggttttggatggatgaagcatctcggaa |
2320526 |
T |
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| Q |
174 |
gcgaggttacaacagagggtacgccatgttgggccataaaaagcggcgctgatgttgtgctggttgct |
241 |
Q |
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| T |
2320525 |
gcaaggttacgacggagggtacgccatgttgggccataaaaagcggagctgatgttgtgttggttgct |
2320458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 15 - 319
Target Start/End: Complemental strand, 2350559 - 2350249
Alignment:
| Q |
15 |
aaaacaagcaaacagaacatagcataatgaaagtgtggaataactgtaacataatctgtag------attctgatgcagttttgagacggttgatgagag |
108 |
Q |
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|||||||| ||||||||||||||||| | |||||||| |||||| ||| |||||| | | |||| |||||||||||||||||||||||||||| |
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| T |
2350559 |
aaaacaagtaaacagaacatagcatagttgaagtgtggcataactttaatataatcagctgtttccaattcggatgcagttttgagacggttgatgagag |
2350460 |
T |
|
| Q |
109 |
tgtgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggaggcgaggttacaacagagggtacgccatgttgggcc |
208 |
Q |
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||||||| |||||||| || ||||| ||||| ||||||||||| ||||||||||||||||| || || ||||| | || ||||| ||||||||||| || |
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| T |
2350459 |
tgtgtaggacccacttacggatttctgagaaagatttgatcttagatggatgaagcatctcagaagcaaggtttcgacggagggcacgccatgttgcacc |
2350360 |
T |
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| Q |
209 |
ataaaaagcggcgctgatgttgtgctggttgctagatatgagtttgtgattgggaagtgctttaggacgatcggagaagagagatgaattttgaacgaga |
308 |
Q |
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||||||||||| |||||||||||| |||||||| || |||| |||| ||||||| ||| |||| ||||| ||||||| | ||| |||||||||||| |
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| T |
2350359 |
ataaaaagcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctctagggcgatcagagaagatggctgagttttgaacgaga |
2350260 |
T |
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| Q |
309 |
gcgtggtgggc |
319 |
Q |
| |
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||||||||||| |
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| T |
2350259 |
gcgtggtgggc |
2350249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 2302968 - 2302757
Alignment:
| Q |
30 |
aacatagcataatgaaagtgtggaataactgtaacataatctgtagattctgatgcagttttgagacggttgatgagagtgtgtagaacccacttccgaa |
129 |
Q |
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|||||||||||| ||||| | | || ||| || ||| |||||| |||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2302968 |
aacatagcataacgaaagggagaaacaaccgtgacagaatctgcagattccgatgcggttttgagacggttgatgagagtgtgtaacacccacttccgaa |
2302869 |
T |
|
| Q |
130 |
tttcagagaatgatttgatcttggatggatgaagcatctcggaggcgaggttacaacagagggtacgccatgttgggccataaaaagcggcgctgatgtt |
229 |
Q |
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|||| ||||| |||||| | ||||| |||||||| |||||||| || ||||||| || |||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
2302868 |
tttctgagaacgatttggttttggaaggatgaagtatctcggaagcaaggttacgacggagggtacgccatgttgggccataaaaaccggagctgatgtt |
2302769 |
T |
|
| Q |
230 |
gtgctggttgct |
241 |
Q |
| |
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||| |||||||| |
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| T |
2302768 |
gtgttggttgct |
2302757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 75 - 320
Target Start/End: Complemental strand, 2293304 - 2293059
Alignment:
| Q |
75 |
gattctgatgcagttttgagacggttgatgagagtgtgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggagg |
174 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| | |
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| T |
2293304 |
gattctgatgcagttttgagacgattgatgagagtgcgtaagacccacttccgaatttctgagaacgatttgagtttggatggatgaagcatctcggaag |
2293205 |
T |
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| Q |
175 |
cgaggttacaacagagggtacgccatgttgggccataaaaagcggcgctgatgttgtgctggttgctagatatgagtttgtgattgggaagtgctttagg |
274 |
Q |
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| ||||||| || |||||||||||||||||||||||| |||||| | |||||||||| |||||||| || | | |||| | | ||||| ||| |||| |
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| T |
2293204 |
caaggttacgacgaagggtacgccatgttgggccataataagcggtgttgatgttgtgttggttgctggacaacattttggaagtaggaagagctgtagg |
2293105 |
T |
|
| Q |
275 |
acgatcggagaagagagatgaattttgaacgagagcgtggtgggcc |
320 |
Q |
| |
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||||| ||||||| ||||| |||||||||||| | ||||||||| |
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| T |
2293104 |
gcgatcagagaagatggatgagttttgaacgagaacatggtgggcc |
2293059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 75 - 241
Target Start/End: Complemental strand, 2309635 - 2309469
Alignment:
| Q |
75 |
gattctgatgcagttttgagacggttgatgagagtgtgtagaacccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcggagg |
174 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||| | | |
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| T |
2309635 |
gattctgatgcagttttgagacggttgatgagagtgcgtaagacccacttctgaatttctgagaacgatttgagtttggatggatgaagcatctcgaaag |
2309536 |
T |
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| Q |
175 |
cgaggttacaacagagggtacgccatgttgggccataaaaagcggcgctgatgttgtgctggttgct |
241 |
Q |
| |
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| ||||||| || |||||||||||||||||||||||||||||||| | |||||||||| |||||||| |
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| T |
2309535 |
caaggttacgacggagggtacgccatgttgggccataaaaagcggtgttgatgttgtgttggttgct |
2309469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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