View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6114_low_8 (Length: 232)

Name: NF6114_low_8
Description: NF6114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6114_low_8
NF6114_low_8
[»] scaffold0014 (1 HSPs)
scaffold0014 (63-145)||(122633-122715)
[»] scaffold0429 (1 HSPs)
scaffold0429 (92-144)||(4962-5014)
[»] scaffold0581 (1 HSPs)
scaffold0581 (1-32)||(8339-8370)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-32)||(24391-24422)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-32)||(33801-33832)
[»] chr8 (7 HSPs)
chr8 (1-32)||(1209773-1209804)
chr8 (1-32)||(4835544-4835575)
chr8 (1-32)||(4840989-4841020)
chr8 (1-32)||(30414031-30414062)
chr8 (1-32)||(34633239-34633270)
chr8 (1-32)||(39657734-39657765)
chr8 (1-32)||(41099299-41099330)
[»] chr7 (6 HSPs)
chr7 (1-32)||(35737065-35737096)
chr7 (1-32)||(41911030-41911061)
chr7 (1-32)||(46358637-46358668)
chr7 (1-32)||(47340264-47340295)
chr7 (1-32)||(48692037-48692068)
chr7 (4-32)||(48306342-48306370)
[»] chr6 (6 HSPs)
chr6 (1-32)||(6900920-6900951)
chr6 (1-32)||(15493291-15493322)
chr6 (1-32)||(33345362-33345393)
chr6 (1-32)||(35121505-35121536)
chr6 (102-136)||(1446699-1446733)
chr6 (3-32)||(1449661-1449690)
[»] chr5 (3 HSPs)
chr5 (1-32)||(14394585-14394616)
chr5 (1-32)||(14940274-14940305)
chr5 (1-32)||(26637755-26637786)
[»] chr4 (11 HSPs)
chr4 (1-32)||(638981-639012)
chr4 (1-32)||(11786091-11786122)
chr4 (1-32)||(11798258-11798289)
chr4 (1-32)||(13635643-13635674)
chr4 (1-32)||(30597816-30597847)
chr4 (1-32)||(35291466-35291497)
chr4 (1-32)||(45256882-45256913)
chr4 (1-32)||(49425975-49426006)
chr4 (1-32)||(49492430-49492461)
chr4 (1-32)||(50644657-50644688)
chr4 (1-32)||(51921183-51921214)
[»] chr3 (12 HSPs)
chr3 (1-32)||(2941844-2941875)
chr3 (1-32)||(3475325-3475356)
chr3 (1-32)||(6097602-6097633)
chr3 (1-32)||(9595898-9595929)
chr3 (1-32)||(19284788-19284819)
chr3 (1-32)||(19384407-19384438)
chr3 (1-32)||(30947829-30947860)
chr3 (1-32)||(31853173-31853204)
chr3 (1-32)||(50755179-50755210)
chr3 (1-32)||(54379279-54379310)
chr3 (3-32)||(47335151-47335180)
chr3 (1-29)||(46237679-46237707)
[»] chr2 (3 HSPs)
chr2 (1-32)||(7487172-7487203)
chr2 (1-32)||(18297194-18297225)
chr2 (1-32)||(39355152-39355183)
[»] chr1 (8 HSPs)
chr1 (1-32)||(18618952-18618983)
chr1 (1-32)||(23174428-23174459)
chr1 (1-32)||(23817427-23817458)
chr1 (1-32)||(24636043-24636074)
chr1 (1-32)||(48762249-48762280)
chr1 (1-32)||(49936855-49936886)
chr1 (1-32)||(50351920-50351951)
chr1 (3-32)||(43452661-43452690)


Alignment Details
Target: scaffold0014 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 122715 - 122633
Alignment:
Q  63 aacgtgatttcatattgaagctttcttctagcaatgttgtttacttcaatgttgaagaacaggttcgtttcttaccctcacag 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  122715 aacgtgatttcatattgaagctttcttctagcaatgttgtttacttcaatgttgaagaacaggttcgtttcttaccctcacag 122633  T

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Target: scaffold0429 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 4962 - 5014
Alignment:
Q  92 agcaatgttgtttacttcaatgttgaagaacaggttcgtttcttaccctcaca 144  Q
    ||||||||||||||||||||||||||| || ||||||||||||||| ||||||    
T  4962 agcaatgttgtttacttcaatgttgaacaagaggttcgtttcttactctcaca 5014  T

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Target: scaffold0581 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 8370 - 8339
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  8370 agcaattatgttgggatttatgcacggtgcat 8339  T

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Target: scaffold0074 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 24391 - 24422
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  24391 agcaattatgttgggatttatgcacggtgcat 24422  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 33801 - 33832
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  33801 agcaattatgttgggatttatgcacggtgcat 33832  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 1209773 - 1209804
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  1209773 agcaattatgttgggatttatgcacggtgcat 1209804  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 4835575 - 4835544
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  4835575 agcaattatgttgggatttatgcacggtgcat 4835544  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 4841020 - 4840989
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  4841020 agcaattatgttgggatttatgcacggtgcat 4840989  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 30414031 - 30414062
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  30414031 agcaattatgttgggatttatgcacggtgcat 30414062  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 34633270 - 34633239
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  34633270 agcaattatgttgggatttatgcacggtgcat 34633239  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 39657765 - 39657734
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  39657765 agcaattatgttgggatttatgcacggtgcat 39657734  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 41099299 - 41099330
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  41099299 agcaattatgttgggatttatgcacggtgcat 41099330  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 35737065 - 35737096
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  35737065 agcaattatgttgggatttatgcacggtgcat 35737096  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 41911061 - 41911030
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  41911061 agcaattatgttgggatttatgcacggtgcat 41911030  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 46358637 - 46358668
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  46358637 agcaattatgttgggatttatgcacggtgcat 46358668  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 47340264 - 47340295
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  47340264 agcaattatgttgggatttatgcacggtgcat 47340295  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 48692037 - 48692068
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  48692037 agcaattatgttgggatttatgcacggtgcat 48692068  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 48306342 - 48306370
Alignment:
Q  4 aattatgttgggatttatgcacggtgcat 32  Q
    |||||||||||||||||||||||||||||    
T  48306342 aattatgttgggatttatgcacggtgcat 48306370  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 6900920 - 6900951
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  6900920 agcaattatgttgggatttatgcacggtgcat 6900951  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 15493291 - 15493322
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  15493291 agcaattatgttgggatttatgcacggtgcat 15493322  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 33345393 - 33345362
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  33345393 agcaattatgttgggatttatgcacggtgcat 33345362  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 35121505 - 35121536
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  35121505 agcaattatgttgggatttatgcacggtgcat 35121536  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 1446733 - 1446699
Alignment:
Q  102 tttacttcaatgttgaagaacaggttcgtttctta 136  Q
    |||||||||||||||||||| ||||||||||||||    
T  1446733 tttacttcaatgttgaagaagaggttcgtttctta 1446699  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 1449661 - 1449690
Alignment:
Q  3 caattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||    
T  1449661 caattatgttgggatttatgcacggtgcat 1449690  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 14394585 - 14394616
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  14394585 agcaattatgttgggatttatgcacggtgcat 14394616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 14940305 - 14940274
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  14940305 agcaattatgttgggatttatgcacggtgcat 14940274  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 26637786 - 26637755
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  26637786 agcaattatgttgggatttatgcacggtgcat 26637755  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 638981 - 639012
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  638981 agcaattatgttgggatttatgcacggtgcat 639012  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 11786091 - 11786122
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  11786091 agcaattatgttgggatttatgcacggtgcat 11786122  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 11798258 - 11798289
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  11798258 agcaattatgttgggatttatgcacggtgcat 11798289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 13635674 - 13635643
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  13635674 agcaattatgttgggatttatgcacggtgcat 13635643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 30597816 - 30597847
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  30597816 agcaattatgttgggatttatgcacggtgcat 30597847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 35291497 - 35291466
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  35291497 agcaattatgttgggatttatgcacggtgcat 35291466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 45256882 - 45256913
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  45256882 agcaattatgttgggatttatgcacggtgcat 45256913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 49426006 - 49425975
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  49426006 agcaattatgttgggatttatgcacggtgcat 49425975  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 49492461 - 49492430
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  49492461 agcaattatgttgggatttatgcacggtgcat 49492430  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 50644657 - 50644688
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  50644657 agcaattatgttgggatttatgcacggtgcat 50644688  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 51921214 - 51921183
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  51921214 agcaattatgttgggatttatgcacggtgcat 51921183  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 2941875 - 2941844
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  2941875 agcaattatgttgggatttatgcacggtgcat 2941844  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 3475356 - 3475325
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  3475356 agcaattatgttgggatttatgcacggtgcat 3475325  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6097633 - 6097602
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  6097633 agcaattatgttgggatttatgcacggtgcat 6097602  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 9595929 - 9595898
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  9595929 agcaattatgttgggatttatgcacggtgcat 9595898  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 19284788 - 19284819
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  19284788 agcaattatgttgggatttatgcacggtgcat 19284819  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 19384438 - 19384407
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  19384438 agcaattatgttgggatttatgcacggtgcat 19384407  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 30947860 - 30947829
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  30947860 agcaattatgttgggatttatgcacggtgcat 30947829  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 31853173 - 31853204
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  31853173 agcaattatgttgggatttatgcacggtgcat 31853204  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 50755179 - 50755210
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  50755179 agcaattatgttgggatttatgcacggtgcat 50755210  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 54379279 - 54379310
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  54379279 agcaattatgttgggatttatgcacggtgcat 54379310  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 47335151 - 47335180
Alignment:
Q  3 caattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||    
T  47335151 caattatgttgggatttatgcacggtgcat 47335180  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 46237707 - 46237679
Alignment:
Q  1 agcaattatgttgggatttatgcacggtg 29  Q
    |||||||||||||||||||||||||||||    
T  46237707 agcaattatgttgggatttatgcacggtg 46237679  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 7487203 - 7487172
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  7487203 agcaattatgttgggatttatgcacggtgcat 7487172  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 18297225 - 18297194
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  18297225 agcaattatgttgggatttatgcacggtgcat 18297194  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 39355152 - 39355183
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  39355152 agcaattatgttgggatttatgcacggtgcat 39355183  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 18618952 - 18618983
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  18618952 agcaattatgttgggatttatgcacggtgcat 18618983  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 23174459 - 23174428
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  23174459 agcaattatgttgggatttatgcacggtgcat 23174428  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 23817427 - 23817458
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  23817427 agcaattatgttgggatttatgcacggtgcat 23817458  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 24636043 - 24636074
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  24636043 agcaattatgttgggatttatgcacggtgcat 24636074  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 48762280 - 48762249
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  48762280 agcaattatgttgggatttatgcacggtgcat 48762249  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 49936886 - 49936855
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  49936886 agcaattatgttgggatttatgcacggtgcat 49936855  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 50351920 - 50351951
Alignment:
Q  1 agcaattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||||    
T  50351920 agcaattatgttgggatttatgcacggtgcat 50351951  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 43452661 - 43452690
Alignment:
Q  3 caattatgttgggatttatgcacggtgcat 32  Q
    ||||||||||||||||||||||||||||||    
T  43452661 caattatgttgggatttatgcacggtgcat 43452690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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