View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6115_high_1 (Length: 298)
Name: NF6115_high_1
Description: NF6115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6115_high_1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 42469465 - 42469749
Alignment:
| Q |
18 |
attacacacttacatttacttggatcaatatcaaactgagacgaatctctgtccttttcaaactacctgtagcaatnnnnnnnn-tatacacacttagca |
116 |
Q |
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| T |
42469465 |
attacacacttacatttacttggatcaatatcaaactgagacgaatctctgtccttttcaaactacctgtagcaataaaaaaatatatacacacttagca |
42469564 |
T |
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| Q |
117 |
tccgctgaaatgaaacgtcacagaaaagtgaggtgccagtcttacataagcaaatgaatctacttgcttaagtcatgtgctgtttggtgtttaatacatt |
216 |
Q |
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| T |
42469565 |
tccgctgaaatgaaacgtcacagaaaagtgaggtgccagtcttacataagcaaatgaatctacttgcttaagtcatgtgctgtttggtgtttaatacatt |
42469664 |
T |
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| Q |
217 |
ggctgaccaagatgacacaattggtagtggaaaatagtttcatagtttaaaacaggg---caacaacaacaaccaagccttatcc |
298 |
Q |
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| T |
42469665 |
ggctgaccaagatgacacaattggtagtggaaaatagtttcatagtttaaaacagggcaacaacaacaacaaccaagccttatcc |
42469749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 42477082 - 42477181
Alignment:
| Q |
158 |
ttacataagcaaatgaatctacttgcttaag-tcatgtgctgtttggtgtttaatacattggctgaccaagatgacacaattggtagtggaaaatagttt |
256 |
Q |
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| T |
42477082 |
ttacttaagtaaatgaatctacttgcttaaaatcatgtgctgtttggtgtttgttacattggctgaccaagatgatacaattggcaatggaaaatagttt |
42477181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 42464128 - 42464203
Alignment:
| Q |
20 |
tacacacttacatttacttggatcaatatcaaactgagacgaatct--ctgtccttttcaaactacctgtagcaat |
93 |
Q |
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||||| ||||||||| |||| |||||| ||||||||||| ||||| |||||||||||||| ||||||||||||| |
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| T |
42464128 |
tacacccttacatttgcttgtatcaattccaaactgagacaaatctatctgtccttttcaaagtacctgtagcaat |
42464203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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