View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6116_low_4 (Length: 278)
Name: NF6116_low_4
Description: NF6116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6116_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 263
Target Start/End: Original strand, 6648889 - 6649142
Alignment:
| Q |
10 |
acatcatcatcaagactttaaaactaagcttcaaaatcattgccctgcaattgcttggcatttatacacgctcatgcatatattgattgtttcttattgc |
109 |
Q |
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| T |
6648889 |
acatcaccatcaagactttaaaactaagcttcaaaatcattgccctgcaattgcttggcatttatacacgctcatgcatatattgattgtttcttattgc |
6648988 |
T |
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| Q |
110 |
aaaaccctcaaaagttataaatgcgagtgcaatattttgatagacttccactagttaccacttaccatctaaaaaacatattaagataattatcagcaaa |
209 |
Q |
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| T |
6648989 |
aaaaccctcaaaagttataaatgcgagtgcaatattttgatagacttccactagttaccacttaccatctaaaaaacatattaagataattatcagcaaa |
6649088 |
T |
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| Q |
210 |
tacaccatgcgtatgttctcattaacacataccaaatgcaagccgtgataaatt |
263 |
Q |
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| T |
6649089 |
tacaccatgtgtatgttctcattaacacataccaaatgcaagccgtgataaatt |
6649142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 5146461 - 5146610
Alignment:
| Q |
22 |
agactttaaaactaagcttcaaaatcattgccctg-caattgcttggcatttatacac--gctcatgcatatat--tgattgtttcttattgca-aaacc |
115 |
Q |
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||||||||||||||||||||||||| ||||| || ||||||| |||||||| || |||||||||||||| |||| |||| ||||| | ||||| |
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| T |
5146461 |
agactttaaaactaagcttcaaaata----ccctggcagttgcttgacatttatatacatgctcatgcatatatattgatagttttttattactgaaacc |
5146556 |
T |
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| Q |
116 |
ctcaaaagttataaatgcgagtgcaatattttgatagacttccactagttacca |
169 |
Q |
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| T |
5146557 |
ctaaaaatttataaatacgagtgtgatactttgatagacttccactagttacca |
5146610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 5135524 - 5135681
Alignment:
| Q |
60 |
ttgcttggcatttatacacgctcatgcatatattgattgtttcttattgca-aaaccctcaaaagttataaatgcgagtgcaatattttgatagacttcc |
158 |
Q |
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||||||| |||||||||| | || |||||||||| ||||||| | | ||| |||||||||||| |||||||| | ||||||||| |||||| |||||| |
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| T |
5135524 |
ttgcttgacatttatacatggtcgtgcatatattaattgttt-tgaatgctgaaaccctcaaaatttataaatacaagtgcaatactttgattaacttcc |
5135622 |
T |
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| Q |
159 |
actagttaccacttaccatctaaaaaa--catattaagataattatcagcaaatacaccatgcgta |
222 |
Q |
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| T |
5135623 |
aatag-------ttaccatctaaaaaaataatattcagataattatcagcaaatatatcatgcgta |
5135681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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