View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6117_low_2 (Length: 411)
Name: NF6117_low_2
Description: NF6117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6117_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 2364048 - 2364225
Alignment:
| Q |
18 |
attttttccttacattcttttcacgtattgtatataataatataaaggaacaannnnnnnnnnnnaatttcccaaaaccgtgtttttattttgaaattgg |
117 |
Q |
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| T |
2364048 |
attttttccttacattcttttcacgtattgtatataataatataaaggaacaattttttctttttaatttcccaaaaccgtgtttttattttgaaattgg |
2364147 |
T |
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| Q |
118 |
atgcccaaatagtagttttgcaataagattgaatatcaacttctcatttcaaacagttaaattaatcaagaaaaactg |
195 |
Q |
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| T |
2364148 |
atgcccaaatagtagttttgcaataagattgaatatcaacttctcatttcaaacagttaaattaatcaagaaaaactg |
2364225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 264 - 401
Target Start/End: Original strand, 2364294 - 2364431
Alignment:
| Q |
264 |
aatcttttaagaatatccagaatttcttctattcaatttttcttttattttcattaatgaaagcacaaaggtaaggttagatgaacaaattttcagattg |
363 |
Q |
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| T |
2364294 |
aatcttttaagaatatccagaatttcttctattcaatttttcttttattttcattaatgaaagcacaaaggtaaggttagatgaacaaattttcagattg |
2364393 |
T |
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| Q |
364 |
ggtgttcttcatttttgttcttatttatgttgtctgtg |
401 |
Q |
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| T |
2364394 |
ggtgttcttcatttttgttcttatttatgttgtctgtg |
2364431 |
T |
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