View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_high_1 (Length: 557)
Name: NF6118_high_1
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 9 - 493
Target Start/End: Complemental strand, 25741404 - 25740921
Alignment:
| Q |
9 |
gacatcatcatccaaagaatgaatgattacagaacacaccaggtttaattcacacttaacaatcaaattcaaacgccggcgcctnnnnnnngtaggtgag |
108 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25741404 |
gacatcaacatccaaagaatgaatgattacagaacacaccaggtttaattcacacttaacaatcaaattcaaacgccggcgcctaaaaaaagtaggtgag |
25741305 |
T |
|
| Q |
109 |
aagtgcccagacggggtagactaacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacga |
208 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741304 |
aagtgcccagacggggtagactaatagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacga |
25741205 |
T |
|
| Q |
209 |
atatgctcttgtagcaaataacatgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25741204 |
atatgctcttgtagcaaataacatgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacaa |
25741105 |
T |
|
| Q |
309 |
tcaaaagtatcaaagcacccggcaactccaaccaatctgcagaaacaatcagaaagagtaattatgtatattcaatatttcctcgtgcgnnnnnnnnata |
408 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25741104 |
tcaagagtatcaaagcacccggcaactccaaccaatctgcagaaacaatcagaaagagtaattatgtatattcaatatttcctcgtgcg-tttttttata |
25741006 |
T |
|
| Q |
409 |
aaggacgaactgaaccaacaatggatgaatcttagtggatcgtgacaacaaggtcaccatgttacttacttactctgccgtgtat |
493 |
Q |
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| T |
25741005 |
aaggacgaactgaaccaacaacggatgaatcttagtggatcgtgacaacaaggtcactctgtcacttgcatactctgccgagtat |
25740921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 359
Target Start/End: Complemental strand, 25744938 - 25744588
Alignment:
| Q |
9 |
gacatcatcatccaaagaatgaatgattacagaacacaccaggtttaattcacacttaacaatcaaattcaaacgccggcgcctnnnnnnngtaggtgag |
108 |
Q |
| |
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||||||| |||| || ||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| | ||||| ||| |||||| |
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| T |
25744938 |
gacatcaacatctaacaaatgaatgattacagaacacaacagatttcattcacacttaacaatcaaattcaatcaccggcacctaaaaaagtatggtgag |
25744839 |
T |
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| Q |
109 |
aagtgcccagacggggtagactaacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacga |
208 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25744838 |
gagtgcccagatggggtagactaacagaagaattatgccaatggaatttgatacgccatttgctctagtgaaggagtttctgaaaccaccagatgcacga |
25744739 |
T |
|
| Q |
209 |
atatgctcttgtagcaaataacatgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacga |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25744738 |
atatgctcttgtagcaaataacatgcaatgacaaggcacacaattactccaacaaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacaa |
25744639 |
T |
|
| Q |
309 |
tcaaaagtatcaaagcacccggcaactccaaccaatctgcagaaacaatca |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744638 |
tcaaaagtatcaaagcacccggcaactccaaccaatctgcagaaacaatca |
25744588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 437 - 538
Target Start/End: Complemental strand, 25740922 - 25740821
Alignment:
| Q |
437 |
atcttagtggatcgtgacaacaaggtcaccatgttacttacttactctgccgtgtatatacttagttttagtacatactagcatataggactgcctaaca |
536 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25740922 |
atctaagtggatcgtgacaacaaggtcaccgtgttacttacttactctgctgtgtatatgcttagttttagtacatactagcatataggactgcctaaca |
25740823 |
T |
|
| Q |
537 |
cg |
538 |
Q |
| |
|
|| |
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|
| T |
25740822 |
cg |
25740821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 325
Target Start/End: Complemental strand, 12514819 - 12514625
Alignment:
| Q |
131 |
aacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgctcttgtagcaaataac |
230 |
Q |
| |
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||||||||||||||||||| | |||||||| |||| ||||| || || || | ||| |||||||||||||| ||||| || |||||||||||||||| |
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| T |
12514819 |
aacagaagaattatgccaattgtatttgatattccatgagcttttgttaaagaatctctaaaaccaccagatgcccgaatttgttcttgtagcaaataac |
12514720 |
T |
|
| Q |
231 |
atgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacgatcaaaagtatcaaagca |
325 |
Q |
| |
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|||||||||||||||| || | | |||||| ||| ||||||||||| |||||| |||||| |||| ||||| || | ||| ||||||||| |
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| T |
12514719 |
atgcaatgacaaggcatactaccaagccaacttcatcgcttctaaaggtgtttgcaaatagatcgggagcaacaacaataagaagaatcaaagca |
12514625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 115 - 246
Target Start/End: Complemental strand, 12510956 - 12510825
Alignment:
| Q |
115 |
ccagacggggtagactaacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgc |
214 |
Q |
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||||| |||||||| || ||||||||||||||||| | |||||| | ||||| ||||| ||||| || | ||| || ||||| ||||| |||||||| |
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| T |
12510956 |
ccagatggggtagattagcagaagaattatgccaattgtatttgacatgccataagcttttgtgaatgaatctctaaagccaccggatgcccgaatatgt |
12510857 |
T |
|
| Q |
215 |
tcttgtagcaaataacatgcaatgacaaggca |
246 |
Q |
| |
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||||| ||||||||||||||||||| |||||| |
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| T |
12510856 |
tcttgcagcaaataacatgcaatgataaggca |
12510825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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