View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_high_12 (Length: 330)
Name: NF6118_high_12
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 2565037 - 2565275
Alignment:
| Q |
18 |
aaaaacacttgcatgctttgaagagtatagagaaattgtaaagattaatgccaacaagctgcatgttaatcatccaccttgccttgcagatggaaatgag |
117 |
Q |
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| T |
2565037 |
aaaaacacttgcatgctttgaagagtatagagaaattgtaaagattaatgccaacaagctgcatgttaatcatccacgttgccttgcagatggaaatgag |
2565136 |
T |
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| Q |
118 |
cttttaatgttccatggtaccaacattgcatgctctcttggcataaataattgttttagcttgtgtgatttagattattgtggtgtatgtcaaattctga |
217 |
Q |
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| T |
2565137 |
cttttaatgttccatggtaccaacattgcatgctctcttggcataaataattcttttagcttgtgtgatttagattattgtggtgtatgtcaaattctga |
2565236 |
T |
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| Q |
218 |
ggcacggtttctctactaacatggaatttcaaggtgccc |
256 |
Q |
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| T |
2565237 |
ggcacggtttctctactaacatggaatttcaaggtgccc |
2565275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 30 - 305
Target Start/End: Original strand, 2552575 - 2552853
Alignment:
| Q |
30 |
atgctttgaagagtatagagaaattgtaaagattaatgccaacaagctgcatgtt---aatcatccaccttgccttgcagatggaaatgagcttttaatg |
126 |
Q |
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| T |
2552575 |
atgctttgaagagtatagagaaatggtgaagattaatgccaacaagctacaaattaagaatcatgcacgttgccttgttgatggaaatgagcttttaatg |
2552674 |
T |
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| Q |
127 |
ttccatggtaccaacattgcatgctctcttggcataaataattgttttagcttgtgtgatttagattattgtggtgtatgtcaaattctgaggcacggtt |
226 |
Q |
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| T |
2552675 |
tttcatggcactaacattgcatgctctcttggcataaatggttcttatagtttatgcactttagactattgtggtgtatgtcaaattttgaggcatggtt |
2552774 |
T |
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| Q |
227 |
tctctactaacatggaatttcaaggtgccctaggtgtttacactacttccataagtggaaaagcttttgaatccattat |
305 |
Q |
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| T |
2552775 |
tttctactaacaaggaatttcaaggtgcattaggagtttacacaagttccacaagtggaaaagcctttgattcaattat |
2552853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 248 - 322
Target Start/End: Original strand, 2566276 - 2566350
Alignment:
| Q |
248 |
aaggtgccctaggtgtttacactacttccataagtggaaaagcttttgaatccattattaggctatgtgatgatg |
322 |
Q |
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| T |
2566276 |
aaggtgccctaggtgtttacactacttccataagtggaaaagcttttgaatccattattaggctatgtgatgatg |
2566350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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