View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_high_18 (Length: 255)
Name: NF6118_high_18
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_high_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 45 - 255
Target Start/End: Original strand, 27770237 - 27770445
Alignment:
| Q |
45 |
acctaattaacaagattttattttctttggtttcaactcaatcaaaacatgaacggtctgaatcat---attaattaataaccgagtaatgttgtagaca |
141 |
Q |
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| T |
27770237 |
acctaattaacaagattttattttgtttggtttcaactcaatcaaaacaagaacggtctgaatcatctgattaattaataaccgagaaatgttgtagaca |
27770336 |
T |
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| Q |
142 |
aggatcatcttccttaatagtaggaaagacacatatgtttctttctacatctctgatctcctgaccctcactccctctctct--cacacactcaaaggat |
239 |
Q |
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| T |
27770337 |
aggatcatcttccttaatagtaggaaagacacata--tttctttttacatctctgatct-----ccctccctccctctctctcacacacactcaaaggat |
27770429 |
T |
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| Q |
240 |
agaggatctaattcct |
255 |
Q |
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| T |
27770430 |
agaggatccaattcct |
27770445 |
T |
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