View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6118_high_27 (Length: 228)

Name: NF6118_high_27
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6118_high_27
NF6118_high_27
[»] chr6 (26 HSPs)
chr6 (112-228)||(29012875-29012991)
chr6 (114-228)||(32740633-32740747)
chr6 (111-228)||(32960652-32960769)
chr6 (117-228)||(29131356-29131467)
chr6 (117-215)||(34281966-34282064)
chr6 (11-115)||(29145191-29145295)
chr6 (117-225)||(29152051-29152159)
chr6 (111-215)||(29124190-29124294)
chr6 (117-225)||(34278369-34278477)
chr6 (13-116)||(29152207-29152310)
chr6 (13-117)||(29131205-29131309)
chr6 (111-221)||(32744786-32744896)
chr6 (111-215)||(29137324-29137428)
chr6 (7-115)||(32744939-32745047)
chr6 (55-112)||(29012771-29012828)
chr6 (13-110)||(34281815-34281912)
chr6 (132-228)||(19697388-19697483)
chr6 (13-96)||(34258352-34258435)
chr6 (41-107)||(29300003-29300069)
chr6 (114-215)||(29300123-29300224)
chr6 (11-115)||(23218674-23218778)
chr6 (61-112)||(34278529-34278580)
chr6 (61-115)||(29137227-29137281)
chr6 (62-115)||(29124094-29124147)
chr6 (7-55)||(29124012-29124060)
chr6 (62-106)||(32960821-32960865)
[»] chr7 (3 HSPs)
chr7 (114-221)||(42446382-42446489)
chr7 (112-214)||(7793863-7793965)
chr7 (14-115)||(42446236-42446337)
[»] chr4 (16 HSPs)
chr4 (114-215)||(9569237-9569338)
chr4 (117-225)||(54295002-54295110)
chr4 (12-116)||(54295158-54295262)
chr4 (114-228)||(9581901-9582015)
chr4 (114-228)||(9587596-9587710)
chr4 (59-116)||(9582060-9582117)
chr4 (59-116)||(9587755-9587812)
chr4 (7-112)||(9593857-9593962)
chr4 (19-116)||(37897848-37897945)
chr4 (7-58)||(37895872-37895923)
chr4 (114-228)||(9593694-9593808)
chr4 (7-116)||(9569083-9569192)
chr4 (114-228)||(9602503-9602617)
chr4 (54-112)||(9602666-9602724)
chr4 (160-212)||(9571882-9571934)
chr4 (7-69)||(9574214-9574276)
[»] scaffold0054 (2 HSPs)
scaffold0054 (114-215)||(39750-39851)
scaffold0054 (114-203)||(33411-33500)
[»] scaffold0134 (1 HSPs)
scaffold0134 (12-115)||(16304-16407)
[»] scaffold0613 (1 HSPs)
scaffold0613 (12-113)||(93-194)
[»] chr5 (2 HSPs)
chr5 (112-181)||(32642992-32643061)
chr5 (114-202)||(42564914-42565002)
[»] scaffold0831 (1 HSPs)
scaffold0831 (117-172)||(1292-1347)
[»] chr8 (1 HSPs)
chr8 (111-216)||(9787431-9787535)
[»] chr1 (2 HSPs)
chr1 (112-148)||(361920-361956)
chr1 (112-148)||(368838-368874)


Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 29012875 - 29012991
Alignment:
Q  112 tgaaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaa 211  Q
    |||||||||| |||| ||| ||||||||||||||||||||| |||| ||| |||||||||| || ||||||||||||||||||||||||||||| |||||    
T  29012875 tgaaggaatcatggaccaaactcttcattgttggaccgttgtcttgcgttaagcgtcctatcggagtggggacgaaaggagaaatattcttcatcagaaa 29012974  T
Q  212 agatgcagaagtagttt 228  Q
    ||||| |||| ||||||    
T  29012975 agatgaagaactagttt 29012991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 32740747 - 32740633
Alignment:
Q  114 aaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaag 213  Q
    ||||||||||||| ||| ||||||||||||||||| ||| || ||||| | ||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  32740747 aaggaatcgtggaccaaactcttcattgttggaccattgtctggtgttcaacgtcctattggagtggggacgaaaggagaaatattcttcctaagaaaag 32740648  T
Q  214 atgcagaagtagttt 228  Q
    ||| |||| ||||||    
T  32740647 atgaagaactagttt 32740633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 32960769 - 32960652
Alignment:
Q  111 atgaaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaa 210  Q
    ||||||||||| |||||||| ||||| |||||| |||| ||||||||||||||||||||||| || ||||||| ||| || |||||||||||||||||||    
T  32960769 atgaaggaatcttggatcaaactctttattgttagaccattgccttgtgttgagcgtcctatgggagtggggaagaagggggaaatattcttcataagaa 32960670  T
Q  211 aagatgcagaagtagttt 228  Q
    |||||| |||| ||||||    
T  32960669 aagatgaagaattagttt 32960652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 29131356 - 29131467
Alignment:
Q  117 gaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaagatg 216  Q
    |||||||||| |||| |||||||||||||||| ||| || | ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||    
T  29131356 gaatcgtggaccaagatcttcattgttggaccattgtctggcgttgagcgtcctattggagtggggacaaaaggagaaatattcttcctaagaaaagatg 29131455  T
Q  217 cagaagtagttt 228  Q
     |||| ||||||    
T  29131456 aagaactagttt 29131467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 34281966 - 34282064
Alignment:
Q  117 gaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaagat 215  Q
    |||||||||||||| ||||| || ||||||||||||||||  |||||||||||||| || |||||||| || || ||||||||||||||||||||||||    
T  34281966 gaatcgtggatcaaactctttatggttggaccgttgccttacgttgagcgtcctatcggagtggggacaaagggggaaatattcttcataagaaaagat 34282064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 29145191 - 29145295
Alignment:
Q  11 gtaacacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatc 110  Q
    ||||||||||||||||||||||||||||  ||||| ||| |||||||||||||||||||| | || ||| ||||||  | ||||||| ||||||||||||    
T  29145191 gtaacacccataccctcagacttagatgattgtttcgatgttgaagcattgtggataaacctggcagtgataaatgatttcattgcattgatctcatatc 29145290  T
Q  111 atgaa 115  Q
    |||||    
T  29145291 atgaa 29145295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 29152159 - 29152051
Alignment:
Q  117 gaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaagatg 216  Q
    |||||||||||||| |||||||| ||||||||||||||||  |||||||||||||| || |||||||  || || ||||||||||| ||||||||||||     
T  29152159 gaatcgtggatcaaactcttcatggttggaccgttgccttacgttgagcgtcctatcggagtggggaaaaatggggaaatattctttataagaaaagata 29152060  T
Q  217 cagaagtag 225  Q
     ||||||||    
T  29152059 aagaagtag 29152051  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 29124190 - 29124294
Alignment:
Q  111 atgaaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaa 210  Q
    ||||||||||| |||| ||||||||||| | | ||||| |||||||||||||| ||||||||||| ||||| | ||| || |||||||||||||| ||||    
T  29124190 atgaaggaatcatggaccaagctcttcactatgggaccattgccttgtgttgatcgtcctattggagtgggtatgaagggggaaatattcttcattagaa 29124289  T
Q  211 aagat 215  Q
    |||||    
T  29124290 aagat 29124294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 34278477 - 34278369
Alignment:
Q  117 gaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaagatg 216  Q
    ||||| |||||||| |||||||| ||||||||||||||||  |||||||||||||| || |||||||| || ||  ||||||||||||||| |||||||     
T  34278477 gaatcttggatcaaactcttcatggttggaccgttgccttacgttgagcgtcctatcggagtggggacaaaggggaaaatattcttcataataaaagata 34278378  T
Q  217 cagaagtag 225  Q
     ||||||||    
T  34278377 aagaagtag 34278369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 29152310 - 29152207
Alignment:
Q  13 aacacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatcat 112  Q
    ||||||||||| | ||||| |||||| |||||||||| || |||||  |||||||||||| |  ||||||||||||||||| ||| ||||||||||| ||    
T  29152310 aacacccatactcccagacgtagatgactgttttgatgttaaagcaaagtggataaacttgggtgtgttaaatgggtccatagcattgatctcatataat 29152211  T
Q  113 gaag 116  Q
    ||||    
T  29152210 gaag 29152207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 29131205 - 29131309
Alignment:
Q  13 aacacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatcat 112  Q
    ||||||||||||||||||| ||||||  ||||||||| || ||| |   ||||||||||| || ||||| |||| |||||||||| |||| |||||||||    
T  29131205 aacacccataccctcagacgtagatgattgttttgatgttaaagaaaattggataaacttggcagtgttgaatgtgtccattgcattgatgtcatatcat 29131304  T
Q  113 gaagg 117  Q
    |||||    
T  29131305 gaagg 29131309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 32744896 - 32744786
Alignment:
Q  111 atgaaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaa 210  Q
    ||||| ||||| |||| ||| ||||||| | ||||||| |||||||| ||||| || |||||||| ||||| || || || |||||||||||||||||||    
T  32744896 atgaaagaatcatggaccaatctcttcactattggaccattgccttgcgttgatcggcctattggagtgggtacaaagggggaaatattcttcataagaa 32744797  T
Q  211 aagatgcagaa 221  Q
    | |||| ||||    
T  32744796 acgatgaagaa 32744786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 29137324 - 29137428
Alignment:
Q  111 atgaaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaa 210  Q
    ||||||||| | |||| || ||||||||  ||| |||| ||||||||||||||||||||| |||| |||||||| || || ||||||| ||| | |||||    
T  29137324 atgaaggaaacatggaccaggctcttcacagttagaccattgccttgtgttgagcgtccttttggagtggggacaaagggggaaatatcctttacaagaa 29137423  T
Q  211 aagat 215  Q
    |||||    
T  29137424 aagat 29137428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 32745047 - 32744939
Alignment:
Q  7 cttcgtaacacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctca 106  Q
    |||| |||||||| ||||||||||  ||||||  | ||||||| ||||| |    |||| |||||| |||||||||||||||||||||||| ||||||||    
T  32745047 cttcataacacccgtaccctcagatgtagatgattcttttgatgttgaaaccaattggagaaacttggcggtgttaaatgggtccattgcattgatctca 32744948  T
Q  107 tatcatgaa 115  Q
    ||| |||||    
T  32744947 tattatgaa 32744939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 29012771 - 29012828
Alignment:
Q  55 agcattgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatcat 112  Q
    |||||||||| ||||||| ||||| |||||||||||||||||| || |||||||||||    
T  29012771 agcattgtggttaaacttggcggtattaaatgggtccattgcattggtctcatatcat 29012828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 34281815 - 34281912
Alignment:
Q  13 aacacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatc 110  Q
    |||| |||||||| ||||| ||||||  ||||||||| || |||||  ||||| |||||| | |||||||||||||| ||| ||| ||||||||||||    
T  34281815 aacagccatacccccagacgtagatgattgttttgatgttaaagcaaagtggaaaaacttggtggtgttaaatgggtacatagcattgatctcatatc 34281912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 19697483 - 19697388
Alignment:
Q  132 ctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaagatgcagaagtagttt 228  Q
    |||||||||  |||||| ||||||||| | |||  |||||| ||||||||||| |||||||||||||||||||| |||||  ||| |||| ||||||    
T  19697483 ctcttcattagtggaccattgccttgtatagagtatcctat-ggtgtggggacaaaaggagaaatattcttcattagaaagaatgaagaactagttt 19697388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 34258435 - 34258352
Alignment:
Q  13 aacacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgc 96  Q
    |||||| ||||||||| || | ||||  ||||||||| || |||||  |||||||||||| |||||||||||||||| ||||||    
T  34258435 aacaccaataccctcatacgttgatgattgttttgatgttaaagcaaagtggataaacttggcggtgttaaatgggttcattgc 34258352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 29300003 - 29300069
Alignment:
Q  41 tgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctcat 107  Q
    ||||||||| ||| ||||  |||||||||||| || ||||||||||||||||||||  |||||||||    
T  29300003 tgttttgatgttggagcaaagtggataaacttggctgtgttaaatgggtccattgccttgatctcat 29300069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 29300123 - 29300224
Alignment:
Q  114 aaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaag 213  Q
    ||||||||||||| ||| ||||||| ||||||||||||| |||| ||  ||||||||||     ||||||| || || ||||||||||| |||| |||||    
T  29300123 aaggaatcgtggaccaatctcttcaatgttggaccgttggcttgcgtccagcgtcctatcataatggggacaaagggggaaatattctttataaaaaaag 29300222  T
Q  214 at 215  Q
    ||    
T  29300223 at 29300224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 23218778 - 23218674
Alignment:
Q  11 gtaacacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatc 110  Q
    |||||||||||||  ||| |||||||||  | ||||||| | ||||||| |||||||||||| ||   |||||||| ||  |||||| ||||||| ||||    
T  23218778 gtaacacccatactttcaaacttagatgattcttttgatgtggaagcatcgtggataaacttggcacggttaaatgagtgaattgcaatgatctcttatc 23218679  T
Q  111 atgaa 115  Q
    |||||    
T  23218678 atgaa 23218674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 34278580 - 34278529
Alignment:
Q  61 gtggataaacttagcggtgttaaatgggtccattgcactgatctcatatcat 112  Q
    |||||||||||| | |||||||||||||||||| ||| ||||| ||||||||    
T  34278580 gtggataaacttggtggtgttaaatgggtccatagcattgatcacatatcat 34278529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 29137227 - 29137281
Alignment:
Q  61 gtggataaacttagcggtgttaaatgggtccattgcactgatctcatatcatgaa 115  Q
    |||||||||||| | ||||||||||  |||||||||| |||| ||||||||||||    
T  29137227 gtggataaacttggtggtgttaaatttgtccattgcattgatatcatatcatgaa 29137281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 29124094 - 29124147
Alignment:
Q  62 tggataaacttagcggtgttaaatgggtccattgcactgatctcatatcatgaa 115  Q
    |||| |||||| || |||||||||||| |||||||| || ||||||||||||||    
T  29124094 tggagaaacttggcagtgttaaatgggaccattgcattgttctcatatcatgaa 29124147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 29124012 - 29124060
Alignment:
Q  7 cttcgtaacacccataccctcagacttagatgtctgttttgatattgaa 55  Q
    |||| |||||||||||||||||||  ||||||| ||||||||| |||||    
T  29124012 cttcataacacccataccctcagatgtagatgtttgttttgatgttgaa 29124060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 32960865 - 32960821
Alignment:
Q  62 tggataaacttagcggtgttaaatgggtccattgcactgatctca 106  Q
    ||||||||||| |||||| ||||||||||||||||| || |||||    
T  32960865 tggataaacttggcggtgctaaatgggtccattgcattgttctca 32960821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 42446382 - 42446489
Alignment:
Q  114 aaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaag 213  Q
    |||||||| |||| ||| ||| |||||||||||||||||| |||||||||||||||||| |  ||||||| ||||||||||||||||||||| |||||||    
T  42446382 aaggaatcatggaccaaactcgtcattgttggaccgttgcattgtgttgagcgtcctatcgaagtggggatgaaaggagaaatattcttcattagaaaag 42446481  T
Q  214 atgcagaa 221  Q
    ||| ||||    
T  42446482 atggagaa 42446489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 7793863 - 7793965
Alignment:
Q  112 tgaaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaa 211  Q
    |||||| ||||||||  || ||||||||| ||||||| ||  |||   | |||||||||||||| |||||||||||||| ||||||||||||  ||||||    
T  7793863 tgaagggatcgtggactaaactcttcattattggaccattttctttcatcgagcgtcctattggagtggggacgaaaggggaaatattcttccaaagaaa 7793962  T
Q  212 aga 214  Q
    |||    
T  7793963 aga 7793965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 42446236 - 42446337
Alignment:
Q  14 acacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatcatg 113  Q
    ||||| |||||||||||||||||||  |||||  || ||| || || |||||||||||| |  |||||||| | |||||||||  ||||||||| |||||    
T  42446236 acacctataccctcagacttagatggttgtttctatgttggagaatcgtggataaacttggttgtgttaaacgagtccattgccttgatctcatttcatg 42446335  T
Q  114 aa 115  Q
    ||    
T  42446336 aa 42446337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 9569237 - 9569338
Alignment:
Q  114 aaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaag 213  Q
    ||||||||||||| ||| |||||| |||||||||||||| ||||  ||||||||||||| || |||||||| ||||||||||||||| |||| |||||||    
T  9569237 aaggaatcgtggaccaaactcttccttgttggaccgttgtcttgcattgagcgtcctatcggagtggggacaaaaggagaaatattcgtcatcagaaaag 9569336  T
Q  214 at 215  Q
    ||    
T  9569337 at 9569338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 54295110 - 54295002
Alignment:
Q  117 gaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaagatg 216  Q
    |||||||||| ||| || |||||||||||||||||| ||| |||||||| |||||| || ||||||||||| || |||||||||||| |||||||||||     
T  54295110 gaatcgtggaccaaacttttcattgttggaccgttgtcttatgttgagcatcctatcggagtggggacgaagggggaaatattcttcgtaagaaaagata 54295011  T
Q  217 cagaagtag 225  Q
     ||||||||    
T  54295010 aagaagtag 54295002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 54295262 - 54295158
Alignment:
Q  12 taacacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatca 111  Q
    ||||||||||| ||||| |||||||||  ||||||||| || ||||||||||||||| ||| |||||  ||||||||| ||||||| |||||||||||||    
T  54295262 taacacccatatcctcaaacttagatgattgttttgatgttcaagcattgtggataaccttggcggtactaaatgggtgcattgcattgatctcatatca 54295163  T
Q  112 tgaag 116  Q
    |||||    
T  54295162 tgaag 54295158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 9582015 - 9581901
Alignment:
Q  114 aaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaag 213  Q
    ||||| || |||| ||| |||||||| |||||||||||| ||||  |||||||||||||||| ||||| |||||||||||||||||| |||| ||| |||    
T  9582015 aaggagtcatggaccaaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtgggaacgaaaggagaaatattcgtcatcagacaag 9581916  T
Q  214 atgcagaagtagttt 228  Q
    ||  |||| ||||||    
T  9581915 ataaagaactagttt 9581901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 9587710 - 9587596
Alignment:
Q  114 aaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaag 213  Q
    ||||| || |||| ||| |||||||| |||||||||||| ||||  |||||||||||||||| ||||| |||||||||||||||||| |||| ||| |||    
T  9587710 aaggagtcatggaccaaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtgggaacgaaaggagaaatattcgtcatcagacaag 9587611  T
Q  214 atgcagaagtagttt 228  Q
    ||  |||| ||||||    
T  9587610 ataaagaactagttt 9587596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 9582117 - 9582060
Alignment:
Q  59 ttgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatcatgaag 116  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  9582117 ttgtggataaacttggcggtgttaaatgggtccattgcattgatctcatatcatgaag 9582060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 9587812 - 9587755
Alignment:
Q  59 ttgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatcatgaag 116  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  9587812 ttgtggataaacttggcggtgttaaatgggtccattgcattgatctcatatcatgaag 9587755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 9593962 - 9593857
Alignment:
Q  7 cttcgtaacacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctca 106  Q
    |||| |||||||||| |||||| |||| ||||  ||||| ||| || | ||||||||||||||||| | |||||||||||||||| ||||| ||||||||    
T  9593962 cttcataacacccattccctcatacttggatgattgtttcgatcttcacgcattgtggataaacttggtggtgttaaatgggtcctttgcattgatctca 9593863  T
Q  107 tatcat 112  Q
    ||||||    
T  9593862 tatcat 9593857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 37897848 - 37897945
Alignment:
Q  19 cataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatcatgaag 116  Q
    ||||||||||||||| || |  ||||||||| || |||| |||||||||||||| ||||||||| ||| |||||||||| || |||||||||||||||    
T  37897848 cataccctcagacttggacgattgttttgatgttaaagctttgtggataaacttggcggtgttatatgagtccattgcattgttctcatatcatgaag 37897945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 37895872 - 37895923
Alignment:
Q  7 cttcgtaacacccataccctcagacttagatgtctgttttgatattgaagca 58  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37895872 cttcgtaacacccataccctcagacttagatgactgttttgatattgaagca 37895923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 9593808 - 9593694
Alignment:
Q  114 aaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaag 213  Q
    ||||||||||||| |||  |||||||||| ||||||||| |||   |||||||||| || || ||||| ||||||||||||||||||||||| ||| |||    
T  9593808 aaggaatcgtggaccaatttcttcattgtcggaccgttgtctttcattgagcgtcccatcggagtgggtacgaaaggagaaatattcttcatcagagaag 9593709  T
Q  214 atgcagaagtagttt 228  Q
    ||  |||| ||||||    
T  9593708 ataaagaactagttt 9593694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 9569083 - 9569192
Alignment:
Q  7 cttcgtaacacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctca 106  Q
    |||| |||||||| | |||||| |||| ||||  ||||| ||| || ||||||||||||||||||| | ||||||||| ||| |||||||  ||||||||    
T  9569083 cttcataacacccgttccctcatacttggatgattgtttcgatgttcaagcattgtggataaacttggtggtgttaaacggggccattgcgttgatctca 9569182  T
Q  107 tatcatgaag 116  Q
    ||||||||||    
T  9569183 tatcatgaag 9569192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 9602617 - 9602503
Alignment:
Q  114 aaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaag 213  Q
    ||||| ||||||| ||| ||||| | ||||||| ||||| ||||  ||||||||||||| || || |||| |||||||||||||||  |||| ||| |||    
T  9602617 aaggagtcgtggaccaaactctttaatgttggatcgttgtcttgcattgagcgtcctatcggggttgggatgaaaggagaaatatttgtcatcagagaag 9602518  T
Q  214 atgcagaagtagttt 228  Q
    ||  |||||||||||    
T  9602517 ataaagaagtagttt 9602503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 9602724 - 9602666
Alignment:
Q  54 aagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatcat 112  Q
    ||||||||||||||||||| | |||||||||||||||| || || ||||||||||||||    
T  9602724 aagcattgtggataaacttggtggtgttaaatgggtccgtttcattgatctcatatcat 9602666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 9571882 - 9571934
Alignment:
Q  160 ttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaa 212  Q
    |||||| ||||||  | ||||||||||||||||||||||||||||||||||||    
T  9571882 ttgagcatcctatcagagtggggacgaaaggagaaatattcttcataagaaaa 9571934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 9574214 - 9574276
Alignment:
Q  7 cttcgtaacacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaa 69  Q
    |||| ||||||||||||||||| |||||||||   |||| ||| || ||||||||||||||||    
T  9574214 cttcataacacccataccctcatacttagatgatagtttcgatgttcaagcattgtggataaa 9574276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 39851 - 39750
Alignment:
Q  114 aaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaaaag 213  Q
    ||||||||||||||||| ||||| | ||||||||||||| |||| |||||||||||||| || |||||||| ||||| ||||| ||||||  ||||||||    
T  39851 aaggaatcgtggatcaaactctttactgttggaccgttgtcttgcgttgagcgtcctatcggagtggggacaaaaggggaaattttcttccaaagaaaag 39752  T
Q  214 at 215  Q
    ||    
T  39751 at 39750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 33500 - 33411
Alignment:
Q  114 aaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttc 203  Q
    ||||||||||||| ||| ||||||| ||||||||||||| |||| ||||||||||||||  | |||||||||||||| ||||| ||||||    
T  33500 aaggaatcgtggaccaaactcttcactgttggaccgttgtcttgcgttgagcgtcctatcagagtggggacgaaaggggaaattttcttc 33411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 16407 - 16304
Alignment:
Q  12 taacacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatca 111  Q
    ||||||||||||||||| |||||||||  ||||||||| |||||||||  ||||||||||| ||   |||||||| || ||||||| ||||||| |||||    
T  16407 taacacccataccctcaaacttagatgattgttttgatgttgaagcatcatggataaacttggcacggttaaatgagtgcattgcattgatctcttatca 16308  T
Q  112 tgaa 115  Q
    ||||    
T  16307 tgaa 16304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 93 - 194
Alignment:
Q  12 taacacccataccctcagacttagatgtctgttttgatattgaagcattgtggataaacttagcggtgttaaatgggtccattgcactgatctcatatca 111  Q
    ||||||||||||||||| |||||||||  ||||||||| |||||||||  ||||||||||| ||   |||||||| || ||||||| ||||||| |||||    
T  93 taacacccataccctcaaacttagatgattgttttgatgttgaagcatcctggataaacttggcatggttaaatgagtgcattgcattgatctcttatca 192  T
Q  112 tg 113  Q
    ||    
T  193 tg 194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 32642992 - 32643061
Alignment:
Q  112 tgaaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggg 181  Q
    |||||||||| |||||||| |||||||||||||||||  || | ||||| ||||||||| |||| |||||    
T  32642992 tgaaggaatcatggatcaaactcttcattgttggacctctgtcatgtgtcgagcgtccttttggagtggg 32643061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 42565002 - 42564914
Alignment:
Q  114 aaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattctt 202  Q
    |||||||| |||||||| || ||||||||||||||  ||||||| ||| |   ||||||||| ||||| | ||| ||||||||||||||    
T  42565002 aaggaatcatggatcaaacttttcattgttggaccactgccttgcgttcatattcctattggagtgggaaagaagggagaaatattctt 42564914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 1347 - 1292
Alignment:
Q  117 gaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctat 172  Q
    ||||||||||  || |||||||||||||| || |||||| ||||||||||||||||    
T  1347 gaatcgtggacaaaactcttcattgttggccctttgcctagtgttgagcgtcctat 1292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 9787535 - 9787431
Alignment:
Q  111 atgaaggaatcgtggatcaagctcttcattgttggaccgttgccttgtgttgagcgtcctattggtgtggggacgaaaggagaaatattcttcataagaa 210  Q
    |||||| |||| |||||||| ||||||| | | | |||| ||||||| || ||||||||||| || |||||||| || || |||||| | ||| ||||||    
T  9787535 atgaagaaatcatggatcaaactcttcactat-gcaccgctgccttgcgtagagcgtcctatcggagtggggaccaagggtgaaataatattcctaagaa 9787437  T
Q  211 aagatg 216  Q
    ||||||    
T  9787436 aagatg 9787431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 361920 - 361956
Alignment:
Q  112 tgaaggaatcgtggatcaagctcttcattgttggacc 148  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  361920 tgaaggaatcatggataaagctcttcattgttggacc 361956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 368838 - 368874
Alignment:
Q  112 tgaaggaatcgtggatcaagctcttcattgttggacc 148  Q
    |||||||||| |||||||| |||||||||||||||||    
T  368838 tgaaggaatcatggatcaaactcttcattgttggacc 368874  T

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