View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_high_3 (Length: 505)
Name: NF6118_high_3
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 9783614 - 9783244
Alignment:
| Q |
18 |
ctcccaaatcccaagataccttcatatgaagaataaccttattgaggtgaataatgaattgttcatcatatgatatgttgaaaaatgaatcgattcatca |
117 |
Q |
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| T |
9783614 |
ctcccaaatcccaagataccttcatacgaagaataaccttattgaggtgaataatgaattgttcatcatatgatatgttgaaaaatgaatcgattgatca |
9783515 |
T |
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| Q |
118 |
tagttgcatgcgaatcagtttaagctttgtatttcaaaaaccaaattttgttcacataggatctgattcataannnnnnnnnnaaggtatgctaatgtga |
217 |
Q |
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| T |
9783514 |
tagt----tgcgaatcagtttaagctttttatttcaaaaaccaaattttgtttacataggatc-gattcataa-tatttttttaaggtatgctaatgtga |
9783421 |
T |
|
| Q |
218 |
gccaagtaatgatttgggactagaataagattaggaccaaaatcaaattcttgggaacaatgcggtagatattaaatgaggt-agtaacaatgacaaaga |
316 |
Q |
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| T |
9783420 |
gccaagtaatgatttgggactagaataagattaggaccaaaatcaaatttttgggaacaatgcggtagatatcaaatgaggtaagtaacaatgacaaaga |
9783321 |
T |
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| Q |
317 |
tcgtttaaacaaaggagt-------aaaagtgaacactataatactttaaagtttgattagatatgtatctaccatc |
386 |
Q |
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|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9783320 |
tcgtttaaacaaaggagttgaggaaaatagtgaacactagaatactttaaagtttgattagatatgtatctaccatc |
9783244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 9783161 - 9783133
Alignment:
| Q |
466 |
acagagcatcatatgacattttgcctatg |
494 |
Q |
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| T |
9783161 |
acagagcatcatatgacattttgcctatg |
9783133 |
T |
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