View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6118_high_6 (Length: 419)

Name: NF6118_high_6
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6118_high_6
NF6118_high_6
[»] chr3 (13 HSPs)
chr3 (34-75)||(37308213-37308254)
chr3 (36-75)||(50399505-50399544)
chr3 (37-75)||(23785134-23785172)
chr3 (34-75)||(24235816-24235857)
chr3 (37-73)||(34857394-34857430)
chr3 (37-72)||(44240047-44240082)
chr3 (36-75)||(52324027-52324066)
chr3 (37-75)||(20874451-20874489)
chr3 (37-75)||(21574373-21574411)
chr3 (43-77)||(32242262-32242296)
chr3 (37-75)||(43116579-43116617)
chr3 (36-73)||(24625392-24625429)
chr3 (37-69)||(22723949-22723981)
[»] chr6 (23 HSPs)
chr6 (36-73)||(4247234-4247271)
chr6 (36-71)||(4003750-4003785)
chr6 (34-73)||(9041565-9041604)
chr6 (37-75)||(14340954-14340992)
chr6 (35-75)||(3155057-3155097)
chr6 (36-75)||(30004783-30004822)
chr6 (44-75)||(31807984-31808015)
chr6 (44-75)||(34404319-34404350)
chr6 (37-75)||(2785819-2785857)
chr6 (37-75)||(4046203-4046241)
chr6 (37-75)||(7713906-7713944)
chr6 (44-78)||(8470131-8470165)
chr6 (37-75)||(32408827-32408865)
chr6 (36-74)||(33818102-33818140)
chr6 (35-72)||(2206474-2206511)
chr6 (38-75)||(7480265-7480302)
chr6 (34-75)||(31461559-31461600)
chr6 (37-73)||(4324580-4324616)
chr6 (36-72)||(7268049-7268085)
chr6 (40-72)||(8817107-8817139)
chr6 (35-71)||(9833246-9833282)
chr6 (35-75)||(32975859-32975899)
chr6 (35-75)||(33068710-33068750)
[»] chr1 (17 HSPs)
chr1 (34-75)||(16322723-16322764)
chr1 (34-77)||(30237894-30237937)
chr1 (38-75)||(29666462-29666499)
chr1 (35-75)||(29415858-29415898)
chr1 (37-76)||(36653328-36653367)
chr1 (34-69)||(49173292-49173327)
chr1 (34-73)||(52542447-52542486)
chr1 (37-75)||(48133090-48133128)
chr1 (37-75)||(49365939-49365977)
chr1 (36-73)||(15514933-15514970)
chr1 (36-73)||(29794072-29794109)
chr1 (38-75)||(46980280-46980317)
chr1 (38-75)||(49560711-49560748)
chr1 (35-75)||(17420084-17420124)
chr1 (36-72)||(22813759-22813795)
chr1 (37-73)||(24263290-24263326)
chr1 (35-71)||(44936739-44936775)
[»] chr8 (19 HSPs)
chr8 (35-75)||(41336794-41336834)
chr8 (37-75)||(6950217-6950255)
chr8 (35-73)||(7008512-7008550)
chr8 (34-73)||(12972739-12972778)
chr8 (36-82)||(2364623-2364669)
chr8 (37-75)||(4558679-4558717)
chr8 (37-75)||(9912993-9913031)
chr8 (37-75)||(11119150-11119188)
chr8 (37-75)||(43208284-43208322)
chr8 (39-73)||(44865718-44865752)
chr8 (34-75)||(8194086-8194127)
chr8 (35-64)||(31862341-31862370)
chr8 (35-68)||(35453772-35453805)
chr8 (34-75)||(35869718-35869759)
chr8 (43-75)||(8536205-8536237)
chr8 (37-73)||(10722514-10722550)
chr8 (35-75)||(26055966-26056006)
chr8 (35-75)||(26499594-26499634)
chr8 (37-73)||(29699137-29699173)
[»] scaffold0085 (1 HSPs)
scaffold0085 (34-73)||(26189-26228)
[»] chr5 (25 HSPs)
chr5 (36-75)||(20982285-20982324)
chr5 (35-74)||(26516180-26516219)
chr5 (37-75)||(39257537-39257575)
chr5 (36-73)||(30585330-30585367)
chr5 (39-75)||(37873987-37874023)
chr5 (39-75)||(40336024-40336060)
chr5 (44-75)||(1550809-1550840)
chr5 (37-72)||(4273523-4273558)
chr5 (36-75)||(4855594-4855633)
chr5 (36-75)||(6725118-6725157)
chr5 (36-75)||(14716620-14716659)
chr5 (36-75)||(39750020-39750059)
chr5 (37-71)||(10296315-10296349)
chr5 (37-75)||(12521447-12521485)
chr5 (37-75)||(41052771-41052809)
chr5 (44-73)||(7026411-7026440)
chr5 (34-75)||(8471990-8472031)
chr5 (34-75)||(13782014-13782055)
chr5 (34-75)||(14257346-14257387)
chr5 (36-73)||(23137365-23137402)
chr5 (37-73)||(11040928-11040964)
chr5 (37-73)||(14331237-14331273)
chr5 (35-75)||(32172534-32172574)
chr5 (42-74)||(36145161-36145193)
chr5 (35-75)||(39823271-39823311)
[»] chr2 (14 HSPs)
chr2 (36-75)||(9477860-9477899)
chr2 (37-75)||(5752751-5752789)
chr2 (34-75)||(5942806-5942847)
chr2 (35-75)||(15171131-15171171)
chr2 (37-73)||(32098462-32098498)
chr2 (35-75)||(40851476-40851516)
chr2 (37-81)||(42974227-42974271)
chr2 (36-75)||(7936922-7936961)
chr2 (36-75)||(14316969-14317008)
chr2 (39-78)||(27663586-27663625)
chr2 (36-75)||(29316925-29316964)
chr2 (45-75)||(34005867-34005897)
chr2 (42-75)||(32757625-32757658)
chr2 (37-73)||(3080338-3080374)
[»] chr7 (20 HSPs)
chr7 (37-75)||(753355-753393)
chr7 (37-75)||(27481445-27481483)
chr7 (35-75)||(30133932-30133972)
chr7 (44-75)||(657842-657873)
chr7 (36-75)||(5620244-5620283)
chr7 (36-75)||(5630065-5630104)
chr7 (44-75)||(39539904-39539935)
chr7 (36-74)||(28702639-28702677)
chr7 (38-75)||(2012784-2012821)
chr7 (37-74)||(22388055-22388092)
chr7 (42-75)||(39630502-39630535)
chr7 (35-75)||(504113-504153)
chr7 (37-73)||(1083872-1083908)
chr7 (37-73)||(2380226-2380262)
chr7 (35-75)||(7100766-7100806)
chr7 (39-75)||(28340549-28340585)
chr7 (43-75)||(28691971-28692003)
chr7 (35-71)||(28844371-28844407)
chr7 (35-75)||(31341075-31341115)
chr7 (37-73)||(46281354-46281390)
[»] scaffold0110 (1 HSPs)
scaffold0110 (36-73)||(34062-34099)
[»] chr4 (13 HSPs)
chr4 (37-74)||(8422988-8423025)
chr4 (38-75)||(23525717-23525754)
chr4 (44-75)||(6427915-6427946)
chr4 (37-72)||(18512570-18512605)
chr4 (37-75)||(33640989-33641027)
chr4 (37-71)||(40709531-40709565)
chr4 (35-75)||(4243221-4243262)
chr4 (38-75)||(19304458-19304495)
chr4 (34-75)||(24443919-24443960)
chr4 (35-68)||(55599054-55599087)
chr4 (35-75)||(485962-486002)
chr4 (37-73)||(3805184-3805220)
chr4 (41-77)||(23676595-23676631)
[»] scaffold0590 (1 HSPs)
scaffold0590 (37-71)||(1225-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (37-71)||(2716-2750)
[»] scaffold0426 (1 HSPs)
scaffold0426 (36-73)||(4026-4063)
[»] scaffold0024 (1 HSPs)
scaffold0024 (35-75)||(27457-27497)


Alignment Details
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 37308213 - 37308254
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37308213 tgcttatgctataagcacttaattaagttgtttatccaaaca 37308254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 50399505 - 50399544
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  50399505 cttatgctataagcaattaattaagttgtttatccaaaca 50399544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 23785172 - 23785134
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  23785172 ttatgctataagcacttaattaagttgtttatgcaaaca 23785134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 24235816 - 24235857
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  24235816 tgcttatgttataaacacttaattaagttgtttatccaaaca 24235857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 34857430 - 34857394
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||| |||||||||||||||||||||||||||||||    
T  34857430 ttatgttataagcacttaattaagttgtttatccaaa 34857394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 44240082 - 44240047
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaa 72  Q
    |||||||||||||||||| |||||||||||||||||    
T  44240082 ttatgctataagcacttacttaagttgtttatccaa 44240047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 52324027 - 52324066
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  52324027 cttatgctataagcacttaattaagttatttatacaaaca 52324066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 20874451 - 20874489
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  20874451 ttatgctataagtgcttaattaagttgtttatccaaaca 20874489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 21574411 - 21574373
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  21574411 ttatactataagcacttaattaagtagtttatccaaaca 21574373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 32242296 - 32242262
Alignment:
Q  43 tataagcacttaattaagttgtttatccaaacacg 77  Q
    |||||||||||||||| ||||||||||||||||||    
T  32242296 tataagcacttaattatgttgtttatccaaacacg 32242262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 43116579 - 43116617
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  43116579 ttatgctataaacactaaattaagttgtttatccaaaca 43116617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 24625392 - 24625429
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaa 73  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  24625392 cttatgctataagcgcttaattaagttgcttatccaaa 24625429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 22723981 - 22723949
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatc 69  Q
    ||||||||||||| |||||||||||||||||||    
T  22723981 ttatgctataagcgcttaattaagttgtttatc 22723949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 4247234 - 4247271
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4247234 cttatgctataagcacttaattaagttgtttatccaaa 4247271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 4003750 - 4003785
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatcca 71  Q
    ||||||||||||||||||||||||||||||||||||    
T  4003750 cttatgctataagcacttaattaagttgtttatcca 4003785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 9041565 - 9041604
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaa 73  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  9041565 tgcttatgctataagcgcttaattaagttgtttatccaaa 9041604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 14340954 - 14340992
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  14340954 ttatgttataagcacttaattaagttgtttatccaaaca 14340992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 3155097 - 3155057
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  3155097 gcttatgctataagcgcttaaataagttgtttatccaaaca 3155057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 30004822 - 30004783
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  30004822 cttatgctataagcactcaattaaattgtttatccaaaca 30004783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 31807984 - 31808015
Alignment:
Q  44 ataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||||||||||||    
T  31807984 ataagcacttaattaagttgtttatccaaaca 31808015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 34404350 - 34404319
Alignment:
Q  44 ataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||||||||||||    
T  34404350 ataagcacttaattaagttgtttatccaaaca 34404319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 2785819 - 2785857
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  2785819 ttatgctataagcgattaattaagttgtttatccaaaca 2785857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 4046203 - 4046241
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  4046203 ttatggtataagcatttaattaagttgtttatccaaaca 4046241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 7713944 - 7713906
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  7713944 ttatgctataagcacgtaattaagttctttatccaaaca 7713906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 8470131 - 8470165
Alignment:
Q  44 ataagcacttaattaagttgtttatccaaacacgg 78  Q
    |||||||||||||||||||||||||| ||||||||    
T  8470131 ataagcacttaattaagttgtttatctaaacacgg 8470165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 32408865 - 32408827
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  32408865 ttatgctataaacacttaattaagttgtttatcgaaaca 32408827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 33818102 - 33818140
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaac 74  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  33818102 cttatgctataaacacttaattaagttgtatatccaaac 33818140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 2206511 - 2206474
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaa 72  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  2206511 gcttatgctataagcacttaattaagaagtttatccaa 2206474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 7480265 - 7480302
Alignment:
Q  38 tatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  7480265 tatgttataagcacttaactaagttgtttatccaaaca 7480302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 31461600 - 31461559
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||  ||||||||||||||||||||||||| |||||||    
T  31461600 tgcttataatataagcacttaattaagttgtttaaccaaaca 31461559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 4324580 - 4324616
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaa 73  Q
    |||||||| |||||||||||||| |||||||||||||    
T  4324580 ttatgctaaaagcacttaattaaattgtttatccaaa 4324616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 7268049 - 7268085
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaa 72  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  7268049 cttatactataaacacttaattaagttgtttatccaa 7268085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 8817139 - 8817107
Alignment:
Q  40 tgctataagcacttaattaagttgtttatccaa 72  Q
    |||||||||||||||||||||||||||| ||||    
T  8817139 tgctataagcacttaattaagttgtttacccaa 8817107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 9833246 - 9833282
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatcca 71  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  9833246 gcttatgttataaacacttaattaagttgtttatcca 9833282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 32975899 - 32975859
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||| | ||||||||||||||||||| |||||    
T  32975899 gcttatgctataaacgcttaattaagttgtttatctaaaca 32975859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 33068710 - 33068750
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||| |||||||||||| |||| |||||||||    
T  33068710 gcttatgctataaacacttaattaagctgttcatccaaaca 33068750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 16322764 - 16322723
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  16322764 tgcttgtgctataagcacttaattaagttgtttatccaaaca 16322723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 30237894 - 30237937
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaacacg 77  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  30237894 tgcttatgctatagacacttaattaagttgtttatccaaacacg 30237937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 29666462 - 29666499
Alignment:
Q  38 tatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||||||| |||||||||||||||||||    
T  29666462 tatgctataagcacttaagtaagttgtttatccaaaca 29666499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 29415858 - 29415898
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  29415858 gcttatgctataagcgcttaattatgttgtttatccaaaca 29415898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 36653367 - 36653328
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaacac 76  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  36653367 ttatgctataattacttaattaagttgtttatccaaacac 36653328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 49173327 - 49173292
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatc 69  Q
    |||||||||||||||||| |||||||||||||||||    
T  49173327 tgcttatgctataagcacataattaagttgtttatc 49173292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 52542486 - 52542447
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaa 73  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  52542486 tgcttatgctatcagcgcttaattaagttgtttatccaaa 52542447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 48133090 - 48133128
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  48133090 ttatgctataagcgcttaattaagttgtctatccaaaca 48133128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 49365939 - 49365977
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  49365939 ttatgctataagcgcttaactaagttgtttatccaaaca 49365977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 15514970 - 15514933
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaa 73  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  15514970 cttatggtataagcgcttaattaagttgtttatccaaa 15514933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 29794072 - 29794109
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaa 73  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  29794072 cttatgctataagcgcttaattaagctgtttatccaaa 29794109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 46980280 - 46980317
Alignment:
Q  38 tatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  46980280 tatgctataagtacttaatttagttgtttatccaaaca 46980317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 49560711 - 49560748
Alignment:
Q  38 tatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  49560711 tatgctataaacacttaagtaagttgtttatccaaaca 49560748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 17420124 - 17420084
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||| |||||| |||||||||||| ||||||||||||||    
T  17420124 gcttatactataatcacttaattaagctgtttatccaaaca 17420084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 22813759 - 22813795
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaa 72  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  22813759 cttatgctataagcacttagttaagttctttatccaa 22813795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 24263290 - 24263326
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaa 73  Q
    |||||||||||||||||||||||  ||||||||||||    
T  24263290 ttatgctataagcacttaattaaactgtttatccaaa 24263326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 44936739 - 44936775
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatcca 71  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  44936739 gcttatactataagcatttaattaagttgtttatcca 44936775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 41336794 - 41336834
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  41336794 gcttatgctataagcaattaattaagttgtttatccaaaca 41336834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 6950255 - 6950217
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  6950255 ttatgctataagcacttaattaagttgtttatctaaaca 6950217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 7008550 - 7008512
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  7008550 gcttatgctataagcgcttaattaagttgtttatccaaa 7008512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 12972778 - 12972739
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaa 73  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  12972778 tgcttatgctataagcgcttaattaagttgtttgtccaaa 12972739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 2364623 - 2364669
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaacacggataa 82  Q
    |||||||||||||| ||||| || |||||||||||||||| ||||||    
T  2364623 cttatgctataagcgcttaactatgttgtttatccaaacagggataa 2364669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 4558717 - 4558679
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  4558717 ttatgctataagcgcgtaattaagttgtttatccaaaca 4558679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 9912993 - 9913031
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  9912993 ttatgctataagcacttaattaatttgttcatccaaaca 9913031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 11119150 - 11119188
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  11119150 ttatgctataaacacttaatcaagttgtttatccaaaca 11119188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 43208284 - 43208322
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  43208284 ttatactataagcacttaattaagttgtttatacaaaca 43208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 44865718 - 44865752
Alignment:
Q  39 atgctataagcacttaattaagttgtttatccaaa 73  Q
    |||||||||||| ||||||||||||||||||||||    
T  44865718 atgctataagcatttaattaagttgtttatccaaa 44865752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 8194086 - 8194127
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||||  ||||||||||||||||||| |||||    
T  8194086 tgcttatgctataagggcttaattaagttgtttatctaaaca 8194127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 31862370 - 31862341
Alignment:
Q  35 gcttatgctataagcacttaattaagttgt 64  Q
    ||||||||||||||||||||||||||||||    
T  31862370 gcttatgctataagcacttaattaagttgt 31862341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 35453772 - 35453805
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttat 68  Q
    ||||||||||||| ||||||||||||||||||||    
T  35453772 gcttatgctataatcacttaattaagttgtttat 35453805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 35869759 - 35869718
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||||| |||||| ||||||| ||||||||||    
T  35869759 tgcttatgctataagcgcttaataaagttgtgtatccaaaca 35869718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 8536205 - 8536237
Alignment:
Q  43 tataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||| ||||||||||||||||||||||    
T  8536205 tataagcactcaattaagttgtttatccaaaca 8536237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 10722550 - 10722514
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  10722550 ttatgctttaagcgcttaattaagttgtttatccaaa 10722514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 26056006 - 26055966
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||| | ||||||||||||| |||||||||    
T  26056006 gcttatgctataagcgcgtaattaagttgttgatccaaaca 26055966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 26499634 - 26499594
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||| | |||||||||||||||||||||||| ||||||    
T  26499634 gcttatgttttaagcacttaattaagttgtttattcaaaca 26499594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 29699173 - 29699137
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  29699173 ttatgctataagcacttaactaagtcgtttatccaaa 29699137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 26189 - 26228
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  26189 tgcttatgctataagcacttaattaaggtgtttatccaaa 26228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 20982285 - 20982324
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  20982285 cttatgctataagcacttaatgaagttgtttatccaaaca 20982324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 26516219 - 26516180
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaac 74  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  26516219 gcttatgctataagcgcttaattaagttgtttatccaaac 26516180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 39257537 - 39257575
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  39257537 ttatgctataagcgcttaattaagttgtttatccaaaca 39257575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 30585367 - 30585330
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  30585367 cttatgctataagcaattaattaagttgtttatccaaa 30585330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 37873987 - 37874023
Alignment:
Q  39 atgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||| |||||||||||||    
T  37873987 atgctataagcacttaattaagtggtttatccaaaca 37874023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 40336024 - 40336060
Alignment:
Q  39 atgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||| |||||||||||||||||||||||    
T  40336024 atgctataagcacataattaagttgtttatccaaaca 40336060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 1550840 - 1550809
Alignment:
Q  44 ataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||||||||||||    
T  1550840 ataagcacttaattaagttgtttatccaaaca 1550809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 4273523 - 4273558
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaa 72  Q
    |||| |||||||||||||||||||||||||||||||    
T  4273523 ttatactataagcacttaattaagttgtttatccaa 4273558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 4855633 - 4855594
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  4855633 cttatgctataagtatttaattaagttgtttatccaaaca 4855594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 6725157 - 6725118
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  6725157 cttatgctataagcacttaattaaattatttatccaaaca 6725118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 14716620 - 14716659
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  14716620 cttatgctataagcacttaattaagctgtatatccaaaca 14716659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 39750059 - 39750020
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  39750059 cttatgttatgagcacttaattaagttgtttatccaaaca 39750020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 10296349 - 10296315
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatcca 71  Q
    |||||||||||||||||||||| ||||||||||||    
T  10296349 ttatgctataagcacttaattatgttgtttatcca 10296315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 12521485 - 12521447
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  12521485 ttatgctaaaagcacttaattaagctgtttatccaaaca 12521447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 41052809 - 41052771
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  41052809 ttatgctacaagcacttaattaaattgtttatccaaaca 41052771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 7026411 - 7026440
Alignment:
Q  44 ataagcacttaattaagttgtttatccaaa 73  Q
    ||||||||||||||||||||||||||||||    
T  7026411 ataagcacttaattaagttgtttatccaaa 7026440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 8472031 - 8471990
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||    
T  8472031 tgcttatgctaaaagcatttaattacgttgtttatccaaaca 8471990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 13782014 - 13782055
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||| |||||| ||||||||||||||||||| |||||    
T  13782014 tgcttatgccataagcgcttaattaagttgtttatctaaaca 13782055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 14257387 - 14257346
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||| ||||||  |||||||||||||||||||||||||    
T  14257387 tgcttatgttataagtgcttaattaagttgtttatccaaaca 14257346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 23137402 - 23137365
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  23137402 cttatactataagcactcaattaagttgtttatccaaa 23137365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 11040964 - 11040928
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaa 73  Q
    |||||||||| || |||||||||||||||||||||||    
T  11040964 ttatgctataggcgcttaattaagttgtttatccaaa 11040928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 14331273 - 14331237
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaa 73  Q
    |||||||||||||||||| | ||||||||||||||||    
T  14331273 ttatgctataagcacttactcaagttgtttatccaaa 14331237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 32172574 - 32172534
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||| ||||| |||||||| ||||||||||||||||    
T  32172574 gcttatgctgtaagcgcttaattatgttgtttatccaaaca 32172534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 36145193 - 36145161
Alignment:
Q  42 ctataagcacttaattaagttgtttatccaaac 74  Q
    ||||||||||||| |||||||||||||||||||    
T  36145193 ctataagcacttagttaagttgtttatccaaac 36145161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 39823271 - 39823311
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||| ||||| ||| |||||||||||||||||||||    
T  39823271 gcttatgctgtaagcgcttgattaagttgtttatccaaaca 39823311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 9477899 - 9477860
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  9477899 cttatgctataaacacttaattaagttgtttatccaaaca 9477860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 5752751 - 5752789
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5752751 ttatgctataagcagttaattaagttgtttatccaaaca 5752789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 5942847 - 5942806
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  5942847 tgcttatgcaataagcgcttaattaagttgtttatccaaaca 5942806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 15171171 - 15171131
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  15171171 gcttatgctataaacacttaattaagttatttatccaaaca 15171131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 32098462 - 32098498
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||||||||||||||||| |||||||||||||||||    
T  32098462 ttatgctataagcacttaagtaagttgtttatccaaa 32098498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 40851516 - 40851476
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  40851516 gcttatgatataagtacttaattaagttgtttatccaaaca 40851476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 42974271 - 42974227
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaacacggata 81  Q
    ||||||||||||| ||||||||||||| ||||||||||| |||||    
T  42974271 ttatgctataagctcttaattaagttgcttatccaaacaaggata 42974227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 7936961 - 7936922
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  7936961 cttatgttaaaagcacttaattaagttgtttatccaaaca 7936922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 14316969 - 14317008
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  14316969 cttatgctataagcgcttaattaatttgtttatccaaaca 14317008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 27663586 - 27663625
Alignment:
Q  39 atgctataagcacttaattaagttgtttatccaaacacgg 78  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  27663586 atgctataagcgctaaattaagttgtttatccaaacacgg 27663625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 29316925 - 29316964
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  29316925 cttatgctgtaaacacttaattaagttgtttatccaaaca 29316964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 34005897 - 34005867
Alignment:
Q  45 taagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||||||||||||||||||||    
T  34005897 taagcacttaattaagttgtttatccaaaca 34005867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 32757625 - 32757658
Alignment:
Q  42 ctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||| ||||||||||||||||||||||||    
T  32757625 ctataagcatttaattaagttgtttatccaaaca 32757658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 3080338 - 3080374
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  3080338 ttatgctataagcacttaattaatttgtttatacaaa 3080374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 753355 - 753393
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  753355 ttatgctataaacacttaattaagttgtttatccaaaca 753393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 27481445 - 27481483
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  27481445 ttatgctataagcacctaattaagttgtttatccaaaca 27481483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 30133972 - 30133932
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  30133972 gcttatgctataagcatttaattgagttgtttatccaaaca 30133932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 657842 - 657873
Alignment:
Q  44 ataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||||||||||||    
T  657842 ataagcacttaattaagttgtttatccaaaca 657873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 5620244 - 5620283
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  5620244 cttaggctataagaacttaattaagttgtttatccaaaca 5620283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 5630065 - 5630104
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  5630065 cttattctataaggacttaattaagttgtttatccaaaca 5630104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 39539904 - 39539935
Alignment:
Q  44 ataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||||||||||||    
T  39539904 ataagcacttaattaagttgtttatccaaaca 39539935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 28702677 - 28702639
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaac 74  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  28702677 cttatgctataagtgcttaattaagttgtttatccaaac 28702639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 2012784 - 2012821
Alignment:
Q  38 tatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  2012784 tatgctataagcacttaattaagctttttatccaaaca 2012821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 22388055 - 22388092
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaac 74  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  22388055 ttatgttataagcgcttaattaagttgtttatccaaac 22388092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 39630535 - 39630502
Alignment:
Q  42 ctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||||||| ||||||    
T  39630535 ctataagcacttaattaagttgtttattcaaaca 39630502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 504153 - 504113
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||||||||||||||  | ||||||||||||    
T  504153 gcttatgctataagcacttaattaaactatttatccaaaca 504113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 1083872 - 1083908
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  1083872 ttatgctataagcgcttaattaagttgtttattcaaa 1083908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 2380262 - 2380226
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  2380262 ttatgttataagcgcttaattaagttgtttatccaaa 2380226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 7100766 - 7100806
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||| ||||||||| |||||||||| |||||||||||||    
T  7100766 gcttatactataagcatttaattaagtagtttatccaaaca 7100806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 28340549 - 28340585
Alignment:
Q  39 atgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  28340549 atgctataagcacttaattaagctgtatatccaaaca 28340585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 28691971 - 28692003
Alignment:
Q  43 tataagcacttaattaagttgtttatccaaaca 75  Q
    ||||| |||||||||||||||||||||||||||    
T  28691971 tataaacacttaattaagttgtttatccaaaca 28692003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 28844407 - 28844371
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatcca 71  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  28844407 gcttatgctataaacacttaattaagttgtatatcca 28844371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 31341115 - 31341075
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||| |||||| ||| |||||||||||||||||||||    
T  31341115 gcttatgcaataagcgcttgattaagttgtttatccaaaca 31341075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 46281354 - 46281390
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaa 73  Q
    |||||||||||||| |||||| |||||||||||||||    
T  46281354 ttatgctataagcagttaattgagttgtttatccaaa 46281390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 34062 - 34099
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaa 73  Q
    |||||||||||||| |||||||||||||||||||||||    
T  34062 cttatgctataagctcttaattaagttgtttatccaaa 34099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 8422988 - 8423025
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaac 74  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  8422988 ttatgctataaacacttaattaagttgtttatccaaac 8423025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 23525717 - 23525754
Alignment:
Q  38 tatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  23525717 tatgctataagcacttaattaagatgtttatccaaaca 23525754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 6427946 - 6427915
Alignment:
Q  44 ataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||||||||||||    
T  6427946 ataagcacttaattaagttgtttatccaaaca 6427915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 18512570 - 18512605
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaa 72  Q
    ||||||||||||||||||||||||||| ||||||||    
T  18512570 ttatgctataagcacttaattaagttgcttatccaa 18512605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 33641027 - 33640989
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  33641027 ttattctataagcacttaattaagctgtttatccaaaca 33640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 40709531 - 40709565
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatcca 71  Q
    ||||| |||||||||||||||||||||||||||||    
T  40709531 ttatgatataagcacttaattaagttgtttatcca 40709565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 4243262 - 4243221
Alignment:
Q  35 gcttatgcta-taagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  4243262 gcttatgctaataagcacttaattaagctgtttatccaaaca 4243221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 19304495 - 19304458
Alignment:
Q  38 tatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  19304495 tatgctataagcacttaattaatctgtttatccaaaca 19304458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 24443960 - 24443919
Alignment:
Q  34 tgcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||||| |||||| ||||||| ||||||||||    
T  24443960 tgcttatgctataagcgcttaataaagttgtgtatccaaaca 24443919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 55599087 - 55599054
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttat 68  Q
    |||||||||||| |||||||||||||||||||||    
T  55599087 gcttatgctatatgcacttaattaagttgtttat 55599054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 486002 - 485962
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    ||||||||||||||| ||||||||||| ||| |||||||||    
T  486002 gcttatgctataagcgcttaattaagtagttcatccaaaca 485962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 3805184 - 3805220
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||||||||||| || ||||||||||||||||||||    
T  3805184 ttatgctataagctctcaattaagttgtttatccaaa 3805220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 23676631 - 23676595
Alignment:
Q  41 gctataagcacttaattaagttgtttatccaaacacg 77  Q
    |||||||||||||| |||| |||||||||||||||||    
T  23676631 gctataagcacttagttaaattgtttatccaaacacg 23676595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 1225 - 1259
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatcca 71  Q
    |||||||||||| ||||||||||||||||||||||    
T  1225 ttatgctataagtacttaattaagttgtttatcca 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 2750 - 2716
Alignment:
Q  37 ttatgctataagcacttaattaagttgtttatcca 71  Q
    |||||||||||| ||||||||||||||||||||||    
T  2750 ttatgctataagtacttaattaagttgtttatcca 2716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 4063 - 4026
Alignment:
Q  36 cttatgctataagcacttaattaagttgtttatccaaa 73  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  4063 cttatactataagcactcaattaagttgtttatccaaa 4026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 27497 - 27457
Alignment:
Q  35 gcttatgctataagcacttaattaagttgtttatccaaaca 75  Q
    |||||||||||||||  ||| ||||||||||||||||||||    
T  27497 gcttatgctataagcgtttatttaagttgtttatccaaaca 27457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University