View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_high_8 (Length: 391)
Name: NF6118_high_8
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 8e-74; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 207 - 384
Target Start/End: Complemental strand, 54809993 - 54809808
Alignment:
| Q |
207 |
aaggataagaaaagtgaagcaattgaataatc--------gaatatggagataacaaacatgtcccaagctctgcaacttcacgctcaattcataaaatc |
298 |
Q |
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| T |
54809993 |
aaggataagaaaagtgaagcaattgaatcatctttgagtagaatatggagataacaaacatgtcccaagctcttcaacttcacgctcaattcataaaatc |
54809894 |
T |
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| Q |
299 |
acaaaaccaacgaaacttctcaaagctcttcactttcgttgctcaatcaccttccggcgacctcaactacgctcgtcttcttctca |
384 |
Q |
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| T |
54809893 |
acaaaaccaacgaaacttctcaaagctcttcactttcgctgctcaatctccttccggcgacctcaactacgctcgtcttcttctca |
54809808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 52616644 - 52616760
Alignment:
| Q |
17 |
cttgtatgtggataagacaacaaaatcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgtcatctccccttccccccaaaaaggccc |
116 |
Q |
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| T |
52616644 |
cttgtatgtggataagacaacaaaatcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgtcatctccccttccccccaaaaaggccc |
52616743 |
T |
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| Q |
117 |
cacgtctcttagatcaa |
133 |
Q |
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| T |
52616744 |
cacgtctcttagatcaa |
52616760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 52624219 - 52624326
Alignment:
| Q |
17 |
cttgtatgtggataagacaacaaaatcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgtcatctccccttccccccaaaaaggccc |
116 |
Q |
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| T |
52624219 |
cttgtatgtggataagacaacaaaatcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgtcatct---------cccaaaaaggccc |
52624309 |
T |
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| Q |
117 |
cacgtctcttagatcaa |
133 |
Q |
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||||||||||||||||| |
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| T |
52624310 |
cacgtctcttagatcaa |
52624326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 52616808 - 52616861
Alignment:
| Q |
131 |
caataacccaactccatttcaatcaataatcttcagatagcaacacctcaacta |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52616808 |
caataacccaactccatttcaatcaataatcttcagatagcaacacctcaacta |
52616861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 52624374 - 52624427
Alignment:
| Q |
131 |
caataacccaactccatttcaatcaataatcttcagatagcaacacctcaacta |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52624374 |
caataacccaactccatttcaatcaataatcttcagatagcaacacctcaacta |
52624427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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