View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6118_low_15 (Length: 325)

Name: NF6118_low_15
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6118_low_15
NF6118_low_15
[»] chr1 (7 HSPs)
chr1 (1-320)||(13043074-13043391)
chr1 (4-196)||(13047947-13048139)
chr1 (4-196)||(13052944-13053136)
chr1 (208-325)||(13048585-13048702)
chr1 (208-325)||(13053582-13053699)
chr1 (276-325)||(48083499-48083549)
chr1 (297-325)||(46412720-46412748)
[»] chr5 (3 HSPs)
chr5 (276-325)||(26045260-26045310)
chr5 (276-325)||(33075160-33075210)
chr5 (286-325)||(37067617-37067657)
[»] scaffold0149 (1 HSPs)
scaffold0149 (277-325)||(24701-24750)
[»] chr3 (6 HSPs)
chr3 (281-321)||(41743590-41743631)
chr3 (276-325)||(331893-331943)
chr3 (276-325)||(10872767-10872817)
chr3 (276-325)||(22496946-22496996)
chr3 (272-325)||(27224675-27224729)
chr3 (276-324)||(7882276-7882325)
[»] chr6 (3 HSPs)
chr6 (275-325)||(8449671-8449722)
chr6 (275-325)||(8458475-8458526)
chr6 (276-325)||(18886303-18886353)
[»] chr7 (2 HSPs)
chr7 (276-325)||(10095714-10095764)
chr7 (285-325)||(3882811-3882852)
[»] chr4 (3 HSPs)
chr4 (276-325)||(3669551-3669601)
chr4 (276-325)||(24798222-24798272)
chr4 (297-325)||(52914093-52914121)
[»] chr2 (1 HSPs)
chr2 (275-324)||(23378038-23378088)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 13043074 - 13043391
Alignment:
Q  1 gttgtgagtttctttggattttgagaagctttgggattttgctgtgcatggtagagaatttaaaggttgagttggtgatggctttctgaaaaacattgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13043074 gttgtgagtttctttggattttgagaagctttgggattttgttgtgcatggtagagaatttaaaggttgagttggtgatggctttctgaaaaacattgag 13043173  T
Q  101 aaggnnnnnnngagaaggagggagagagatgtaggagatgaatgattgcatgtacgactttgaagaggtctttatttggatattatatatacatgatatt 200  Q
    |||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13043174 aagaaaaaaaagagaaggagggagagagatgtaggagatgaatgattgcatgtacgactttgaagaggtctttagttggatattatatatacatgatatt 13043273  T
Q  201 tctattgtttttgttgataaacttaaaacaaacacactcaaacaacatataatttagaacagataggttagtacttacaccctctggttactattaaagc 300  Q
    |||| | |||||  ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  13043274 tctaattttttt--tgataaacttaaaacaaacactctcaaacaacatataatttagaatagataggttagtacttacaccctctggtcactattaaagc 13043371  T
Q  301 aaaaattaatattttagatt 320  Q
    ||||||||||||||||||||    
T  13043372 aaaaattaatattttagatt 13043391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 4 - 196
Target Start/End: Original strand, 13047947 - 13048139
Alignment:
Q  4 gtgagtttctttggattttgagaagctttgggattttgctgtgcatggtagagaatttaaaggttgagttggtgatggctttctgaaaaacattgagaag 103  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  13047947 gtgagtttctttggtttttgagaagctttgggattttgttgtgcatggtagagaatttagaggttgagttggtgatgactttctgaaaaacattgagaag 13048046  T
Q  104 gnnnnnnngagaaggagggagagagatgtaggagatgaatgattgcatgtacgactttgaagaggtctttatttggatattatatatacatga 196  Q
    |       ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  13048047 gaaaaaaagagaaggagggagagagatgtaggagatgaatgattgcatgcacgattttgaagaggtctttatttggatattatatatacatga 13048139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 4 - 196
Target Start/End: Original strand, 13052944 - 13053136
Alignment:
Q  4 gtgagtttctttggattttgagaagctttgggattttgctgtgcatggtagagaatttaaaggttgagttggtgatggctttctgaaaaacattgagaag 103  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  13052944 gtgagtttctttggtttttgagaagctttgggattttgttgtgcatggtagagaatttagaggttgagttggtgatgactttctgaaaaacattgagaag 13053043  T
Q  104 gnnnnnnngagaaggagggagagagatgtaggagatgaatgattgcatgtacgactttgaagaggtctttatttggatattatatatacatga 196  Q
    |       ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  13053044 gaaaaaaagagaaggagggagagagatgtaggagatgaatgattgcatgcacgattttgaagaggtctttatttggatattatatatacatga 13053136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 208 - 325
Target Start/End: Original strand, 13048585 - 13048702
Alignment:
Q  208 tttttgttgataaacttaaaacaaacacactcaaacaacatataatttagaacagataggttagtacttacaccctctggttactattaaagcaaaaatt 307  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||| |||||||||||| |||| ||||||||||||||||||    
T  13048585 ttttttttgataaacttaaaacaaacacactcaaacaacatataatttagaatggataagttaatacttacaccctttggtcactattaaagcaaaaatt 13048684  T
Q  308 aatattttagattcattc 325  Q
    ||||||||||||||||||    
T  13048685 aatattttagattcattc 13048702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 208 - 325
Target Start/End: Original strand, 13053582 - 13053699
Alignment:
Q  208 tttttgttgataaacttaaaacaaacacactcaaacaacatataatttagaacagataggttagtacttacaccctctggttactattaaagcaaaaatt 307  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||| |||||||||||| |||| ||||||||||||||||||    
T  13053582 ttttttttgataaacttaaaacaaacacactcaaacaacatataatttagaatggataagttaatacttacaccctttggtcactattaaagcaaaaatt 13053681  T
Q  308 aatattttagattcattc 325  Q
    ||||||||||||||||||    
T  13053682 aatattttagattcattc 13053699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 48083499 - 48083549
Alignment:
Q  276 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    ||||||||||||| ||||||| ||||||||||||||||||||| |||||||    
T  48083499 tacaccctctggtcactattataagcaaaaattaatattttaggttcattc 48083549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 325
Target Start/End: Original strand, 46412720 - 46412748
Alignment:
Q  297 aagcaaaaattaatattttagattcattc 325  Q
    |||||||||||||||||||||||||||||    
T  46412720 aagcaaaaattaatattttagattcattc 46412748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 26045260 - 26045310
Alignment:
Q  276 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  26045260 tacaccctccggttactattataagcaaaaatttatattttagattcattc 26045310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 33075210 - 33075160
Alignment:
Q  276 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    |||||| |||||| ||||||| ||||||||||||||||||||| |||||||    
T  33075210 tacaccatctggtcactattataagcaaaaattaatattttaggttcattc 33075160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 286 - 325
Target Start/End: Original strand, 37067617 - 37067657
Alignment:
Q  286 ggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  37067617 ggttactattataaacaaaaattaatattttagattcattc 37067657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 24750 - 24701
Alignment:
Q  277 acaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    |||||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  24750 acaccctccggtcactattataagcaaaaattaatattttagattcattc 24701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 41743590 - 41743631
Alignment:
Q  281 cctctggttactatta-aagcaaaaattaatattttagattc 321  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  41743590 cctctggttactattataagcaaaaattaatattttagattc 41743631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 331943 - 331893
Alignment:
Q  276 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    ||||||||| ||| ||||||| ||||||||||||| |||||||||||||||    
T  331943 tacaccctccggtcactattataagcaaaaattaacattttagattcattc 331893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 10872817 - 10872767
Alignment:
Q  276 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    ||||||||| ||| ||||||| ||||||||||| |||||||||||||||||    
T  10872817 tacaccctccggtcactattataagcaaaaatttatattttagattcattc 10872767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 22496946 - 22496996
Alignment:
Q  276 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    |||||||||  || ||||||| |||||||||||||||||||||||||||||    
T  22496946 tacaccctccagtcactattataagcaaaaattaatattttagattcattc 22496996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 27224729 - 27224675
Alignment:
Q  272 tacttacaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    ||||||||||||| ||||||||||| ||||||||||||  |||||||||| ||||    
T  27224729 tacttacaccctccggttactattataagcaaaaattagcattttagattgattc 27224675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 7882276 - 7882325
Alignment:
Q  276 tacaccctctggttactatta-aagcaaaaattaatattttagattcatt 324  Q
    ||||||||| ||| ||||||| ||||||||||||| ||||||||||||||    
T  7882276 tacaccctccggtcactattataagcaaaaattaacattttagattcatt 7882325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 8449722 - 8449671
Alignment:
Q  275 ttacaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    ||||| |||| ||| ||||||| |||||||||||||||||||||||||||||    
T  8449722 ttacatcctccggtcactattataagcaaaaattaatattttagattcattc 8449671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 8458526 - 8458475
Alignment:
Q  275 ttacaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    ||||| |||| ||| ||||||| |||||||||||||||||||||||||||||    
T  8458526 ttacatcctccggtcactattataagcaaaaattaatattttagattcattc 8458475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 18886303 - 18886353
Alignment:
Q  276 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    |||||||||  || ||||||| |||||||||||||||||||||||||||||    
T  18886303 tacaccctccagtcactattataagcaaaaattaatattttagattcattc 18886353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 10095714 - 10095764
Alignment:
Q  276 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    ||||||||| ||| ||||||| ||||||||||||| |||||||||||||||    
T  10095714 tacaccctccggtcactattataagcaaaaattaacattttagattcattc 10095764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 3882811 - 3882852
Alignment:
Q  285 tggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  3882811 tggttactattataaacaaaaattaatattttagattcattc 3882852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 3669551 - 3669601
Alignment:
Q  276 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    ||||||||||||| ||||||| ||||||| ||| |||||||||||||||||    
T  3669551 tacaccctctggtcactattataagcaaatatttatattttagattcattc 3669601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 24798272 - 24798222
Alignment:
Q  276 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 325  Q
    ||||| ||||||| ||||||| |||||||||||||||||||| ||||||||    
T  24798272 tacactctctggtcactattataagcaaaaattaatattttaaattcattc 24798222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 325
Target Start/End: Complemental strand, 52914121 - 52914093
Alignment:
Q  297 aagcaaaaattaatattttagattcattc 325  Q
    |||||||||||||||||||||||||||||    
T  52914121 aagcaaaaattaatattttagattcattc 52914093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 23378088 - 23378038
Alignment:
Q  275 ttacaccctctggttactatta-aagcaaaaattaatattttagattcatt 324  Q
    |||||||||| ||| | ||||| ||||||||||||||||||||||||||||    
T  23378088 ttacaccctccggtcattattataagcaaaaattaatattttagattcatt 23378038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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