View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6118_low_16 (Length: 305)

Name: NF6118_low_16
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6118_low_16
NF6118_low_16
[»] chr4 (8 HSPs)
chr4 (20-293)||(29676415-29676688)
chr4 (20-231)||(35968306-35968517)
chr4 (20-226)||(36636826-36637032)
chr4 (20-108)||(35974134-35974222)
chr4 (93-221)||(38863107-38863235)
chr4 (44-177)||(36668513-36668646)
chr4 (40-96)||(36607460-36607516)
chr4 (63-226)||(36909544-36909707)
[»] chr5 (2 HSPs)
chr5 (51-231)||(19658253-19658433)
chr5 (51-231)||(19675092-19675272)
[»] chr1 (1 HSPs)
chr1 (20-226)||(42602763-42602969)
[»] chr8 (1 HSPs)
chr8 (123-259)||(35335816-35335952)
[»] chr6 (1 HSPs)
chr6 (145-221)||(33844287-33844363)
[»] chr2 (2 HSPs)
chr2 (163-216)||(43864074-43864127)
chr2 (163-216)||(43875241-43875294)
[»] chr7 (1 HSPs)
chr7 (169-201)||(32413649-32413681)
[»] chr3 (1 HSPs)
chr3 (171-231)||(25596897-25596957)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 29676688 - 29676415
Alignment:
Q  20 acggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29676688 acggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtggcaaatgttgaa 29676589  T
Q  120 gcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676588 gcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaa 29676489  T
Q  220 tgcgaagtagaaggcaatccgataagttgcttagcctgtcttcaccttctttgttttcttcctcacagtgcctt 293  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29676488 tgcgaagtagaaggcaatccgataagtcgcttagcctgtcttcaccttctttgttttcttcctcacagtgcctt 29676415  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 35968517 - 35968306
Alignment:
Q  20 acggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaa 119  Q
    ||||| || |||||||||| |||||| | | ||||||||||||||||||||||| ||||| |||||  ||| |||||| ||  |||||| |||  |||||    
T  35968517 acggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaaaatcttagacacgaacatggcaaattgcttcggagtggaaaaacttgaa 35968418  T
Q  120 gcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaa 219  Q
    || | ||| ||||||||||  ||| ||||||||||||||||  |||| |||||||||| ||||||||||||||| ||||| | || ||| || |||||||    
T  35968417 gcatacaacataagagttgaaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaataatgacaaaa 35968318  T
Q  220 tgcgaagtagaa 231  Q
    || |||| ||||    
T  35968317 tgtgaaggagaa 35968306  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 36636826 - 36637032
Alignment:
Q  20 acggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaa 119  Q
    ||||| ||||||||||||  |||||||||| |||||||||||||||||||| || ||||| || ||  ||| |||||| |||| ||||| |||| ||||     
T  36636826 acggtcaagatcaagagcgtgcagtgcagttgaggtatcacgaagagtcaatatgttagacacaaacatggcaaattgcttaacagtggaaaatcttgat 36636925  T
Q  120 gcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaa 219  Q
    || | ||| ||||||||||| ||| ||||||||||||||    ||||||| |||||||  ||||||   || || ||||||| ||||||||| |||||||    
T  36636926 gcatacaacataagagttggaatacgtttccagagatgtctccatctcttagacaaaacacaagttctgacaacatgtttggtattcaaaaatgacaaaa 36637025  T
Q  220 tgcgaag 226  Q
    || ||||    
T  36637026 tgtgaag 36637032  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 35974222 - 35974134
Alignment:
Q  20 acggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgg 108  Q
    ||||| || ||||| |||| |||||||| | ||||||||||||||||||||||| ||| | |||||| ||| |||||| ||| ||||||    
T  35974222 acggttaatatcaatagcttgcagtgcaattgaggtatcacgaagagtcaaaatcttatacacgaatatggcaaattgcttacgagtgg 35974134  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 38863107 - 38863235
Alignment:
Q  93 aattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacga 192  Q
    |||||||||| ||||| |||| ||||||  ||||| ||||||| ||| ||| ||||| |||||||||   |||||||||||||||  |||||| ||| |     
T  38863107 aattgtttaacagtggaaaatcttgaagaatgcaatataagagatggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaatgg 38863206  T
Q  193 cgtgtttggcattcaaaaacgacaaaatg 221  Q
    | ||||||| ||||||  | |||||||||    
T  38863207 catgtttggtattcaacgatgacaaaatg 38863235  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 177
Target Start/End: Original strand, 36668513 - 36668646
Alignment:
Q  44 tgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggata 143  Q
    |||||| ||| ||||||||||||||||||| ||||| || ||| | | |||||| |||| |  || |||| | ||||  ||||| ||||| ||||  |||    
T  36668513 tgcagttgagctatcacgaagagtcaaaatcttagacacaaatgttgtaaattgcttaacataggaaaatctagaagaatgcaatataagggttgaaata 36668612  T
Q  144 tgtttccagagatgttcatatctcttggacaaaa 177  Q
     ||||||||||||||||  ||||||| |||||||    
T  36668613 cgtttccagagatgttcccatctctttgacaaaa 36668646  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 36607460 - 36607516
Alignment:
Q  40 gcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaatt 96  Q
    |||||||| | ||||||||||||||||||||||| || || |||||||||| |||||    
T  36607460 gcagtgcaattgaggtatcacgaagagtcaaaatatttgacacgaatttggtaaatt 36607516  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 36909707 - 36909544
Alignment:
Q  63 agagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcat 162  Q
    ||||||||||| ||||| |||||| | | |||||| |||| ||||| |||| ||||||  || || ||||||||||| ||  | |||||||||||| |      
T  36909707 agagtcaaaatcttagacacgaatgttgtaaattgcttaatagtggaaaatcttgaagaatgtaacataagagttggaattcgcttccagagatgtcccc 36909608  T
Q  163 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaag 226  Q
    |||||||||| ||||  ||||||   ||| | ||||||| |||||| || || |||||| ||||    
T  36909607 atctcttggaaaaaacacaagttccgacggcatgtttggtattcaagaatgataaaatgtgaag 36909544  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 231
Target Start/End: Original strand, 19658253 - 19658433
Alignment:
Q  51 gaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttcc 150  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||| || ||||||| |||| | ||||  ||||||||||||||||| ||| ||||||    
T  19658253 gaggtatcacgaagagtcaaaatcttaggcacgaatttggaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagtttcc 19658352  T
Q  151 agagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaa 231  Q
    ||||||      ||||| |||||||||  |||||||||||| | | ||| || | |||||| ||||||||| |||| ||||    
T  19658353 agagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19658433  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 51 - 231
Target Start/End: Original strand, 19675092 - 19675272
Alignment:
Q  51 gaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttcc 150  Q
    ||||||||||||||||||||||| ||||  |||||||| |||||||| || ||||||| |||| | ||||  ||||||||||||||||| ||| ||||||    
T  19675092 gaggtatcacgaagagtcaaaatcttaggcacgaatttcgaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagtttcc 19675191  T
Q  151 agagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaa 231  Q
    ||||||      ||||| |||||||||  |||||||||||| | | ||| || | |||||| ||||||||| |||| ||||    
T  19675192 agagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19675272  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 42602763 - 42602969
Alignment:
Q  20 acggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaa 119  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||| ||||| || ||| ||||||| || || | |||||||||  ||||     
T  42602763 acggtgaagatcaagagcatgcagtgcagttgaggtatcacgaagagtcaaaatcttagacacaaatatggaaaaatgcttcacagtgggaaagtttgag 42602862  T
Q  120 gcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaa 219  Q
    |  | ||| |||||||| || ||| ||||||| | | | |   |||| |||||||| |||||||||||||||  ||||||||  || | ||| |||||||    
T  42602863 gaatccaatataagagtaggaatacgtttccacataagcttccatcttttggacaagatgcaagtttgaacggtgtgtttggagttaagaaatgacaaaa 42602962  T
Q  220 tgcgaag 226  Q
    || ||||    
T  42602963 tgtgaag 42602969  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 259
Target Start/End: Complemental strand, 35335952 - 35335816
Alignment:
Q  123 tgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgc 222  Q
    ||||| ||||| ||||| ||| ||||||| |||||||   |||| |||||||||| |||||||||||| || ||||||| ||  || || |||||||||     
T  35335952 tgcaatataagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaacaacttgtttggaatgtaataatgacaaaatgt 35335853  T
Q  223 gaagtagaaggcaatccgataagttgcttagcctgtc 259  Q
    ||||||||| |||||| | |||||  |||| ||||||    
T  35335852 gaagtagaatgcaatcaggtaagtcacttatcctgtc 35335816  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 33844287 - 33844363
Alignment:
Q  145 gtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatg 221  Q
    |||||||||||||||   ||||  ||||||||||||||||||||||| ||| || ||  |||||||| |||||||||    
T  33844287 gtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatg 33844363  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 43864074 - 43864127
Alignment:
Q  163 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgaca 216  Q
    |||| |||||||||||||||||||||||| | | ||| ||||||||||| ||||    
T  43864074 atcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggaca 43864127  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 43875241 - 43875294
Alignment:
Q  163 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgaca 216  Q
    |||| |||||||||||||||||||||||||| | ||| ||||| ||||| ||||    
T  43875241 atcttttggacaaaatgcaagtttgaacgacctcttttgcatttaaaaaggaca 43875294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 32413681 - 32413649
Alignment:
Q  169 tggacaaaatgcaagtttgaacgacgtgtttgg 201  Q
    ||||||||||||||||||||||| |||||||||    
T  32413681 tggacaaaatgcaagtttgaacggcgtgtttgg 32413649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 25596957 - 25596897
Alignment:
Q  171 gacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaa 231  Q
    ||||||||||||||||||||| | |  |||| ||||||||| ||||||||| |||| ||||    
T  25596957 gacaaaatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaagaagaa 25596897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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